Amino acid dipepetide frequency for Cabbage cytorhabdovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.828AlaAla: 3.828 ± 1.781
0.255AlaCys: 0.255 ± 0.146
4.339AlaAsp: 4.339 ± 1.1
3.573AlaGlu: 3.573 ± 0.638
2.042AlaPhe: 2.042 ± 1.038
3.318AlaGly: 3.318 ± 1.378
1.021AlaHis: 1.021 ± 0.681
3.573AlaIle: 3.573 ± 1.035
3.828AlaLys: 3.828 ± 1.109
8.167AlaLeu: 8.167 ± 1.128
1.021AlaMet: 1.021 ± 0.364
3.573AlaAsn: 3.573 ± 1.211
2.808AlaPro: 2.808 ± 0.684
1.021AlaGln: 1.021 ± 0.426
2.808AlaArg: 2.808 ± 0.903
4.339AlaSer: 4.339 ± 1.029
3.063AlaThr: 3.063 ± 1.186
4.084AlaVal: 4.084 ± 2.003
0.766AlaTrp: 0.766 ± 0.511
2.042AlaTyr: 2.042 ± 0.53
0.0AlaXaa: 0.0 ± 0.0
Cys
1.021CysAla: 1.021 ± 0.333
0.255CysCys: 0.255 ± 0.146
1.276CysAsp: 1.276 ± 0.923
0.766CysGlu: 0.766 ± 0.391
1.021CysPhe: 1.021 ± 0.529
0.255CysGly: 0.255 ± 0.299
0.51CysHis: 0.51 ± 0.243
0.766CysIle: 0.766 ± 0.285
1.021CysLys: 1.021 ± 0.354
2.808CysLeu: 2.808 ± 1.508
0.255CysMet: 0.255 ± 0.146
0.766CysAsn: 0.766 ± 0.266
1.276CysPro: 1.276 ± 0.624
1.021CysGln: 1.021 ± 0.904
0.51CysArg: 0.51 ± 0.243
2.297CysSer: 2.297 ± 0.557
0.766CysThr: 0.766 ± 0.29
0.766CysVal: 0.766 ± 0.438
0.255CysTrp: 0.255 ± 0.146
1.021CysTyr: 1.021 ± 0.365
0.0CysXaa: 0.0 ± 0.0
Asp
2.808AspAla: 2.808 ± 1.132
1.276AspCys: 1.276 ± 0.395
5.105AspAsp: 5.105 ± 1.931
3.573AspGlu: 3.573 ± 1.355
2.552AspPhe: 2.552 ± 0.891
1.787AspGly: 1.787 ± 0.687
1.531AspHis: 1.531 ± 0.49
4.849AspIle: 4.849 ± 1.345
2.042AspLys: 2.042 ± 0.729
7.402AspLeu: 7.402 ± 0.757
2.297AspMet: 2.297 ± 0.667
1.276AspAsn: 1.276 ± 0.472
4.084AspPro: 4.084 ± 0.561
1.531AspGln: 1.531 ± 0.689
1.787AspArg: 1.787 ± 0.452
3.063AspSer: 3.063 ± 0.536
2.552AspThr: 2.552 ± 0.515
4.594AspVal: 4.594 ± 1.058
1.276AspTrp: 1.276 ± 0.856
1.021AspTyr: 1.021 ± 0.354
0.0AspXaa: 0.0 ± 0.0
Glu
3.573GluAla: 3.573 ± 1.004
0.766GluCys: 0.766 ± 0.742
2.808GluAsp: 2.808 ± 0.623
1.787GluGlu: 1.787 ± 1.0
1.787GluPhe: 1.787 ± 0.696
4.849GluGly: 4.849 ± 1.168
1.531GluHis: 1.531 ± 0.472
6.891GluIle: 6.891 ± 1.882
3.573GluLys: 3.573 ± 1.032
4.339GluLeu: 4.339 ± 0.873
1.787GluMet: 1.787 ± 0.611
1.787GluAsn: 1.787 ± 0.749
2.042GluPro: 2.042 ± 0.466
1.021GluGln: 1.021 ± 0.519
4.594GluArg: 4.594 ± 0.678
5.36GluSer: 5.36 ± 0.785
3.828GluThr: 3.828 ± 1.252
2.042GluVal: 2.042 ± 1.103
0.766GluTrp: 0.766 ± 0.438
0.766GluTyr: 0.766 ± 0.266
0.0GluXaa: 0.0 ± 0.0
Phe
2.042PheAla: 2.042 ± 1.057
0.255PheCys: 0.255 ± 0.146
1.276PheAsp: 1.276 ± 0.579
2.297PheGlu: 2.297 ± 0.973
1.021PhePhe: 1.021 ± 0.467
2.042PheGly: 2.042 ± 0.451
1.276PheHis: 1.276 ± 0.407
1.787PheIle: 1.787 ± 0.649
2.552PheLys: 2.552 ± 1.161
2.552PheLeu: 2.552 ± 0.609
0.51PheMet: 0.51 ± 0.362
3.063PheAsn: 3.063 ± 0.712
2.297PhePro: 2.297 ± 1.086
0.766PheGln: 0.766 ± 0.29
1.021PheArg: 1.021 ± 0.519
2.808PheSer: 2.808 ± 0.705
1.276PheThr: 1.276 ± 0.488
2.552PheVal: 2.552 ± 0.718
0.51PheTrp: 0.51 ± 0.243
1.021PheTyr: 1.021 ± 0.391
0.0PheXaa: 0.0 ± 0.0
Gly
2.552GlyAla: 2.552 ± 1.225
0.766GlyCys: 0.766 ± 0.391
3.828GlyAsp: 3.828 ± 0.881
2.552GlyGlu: 2.552 ± 0.28
2.552GlyPhe: 2.552 ± 0.762
2.042GlyGly: 2.042 ± 0.648
1.021GlyHis: 1.021 ± 0.354
3.573GlyIle: 3.573 ± 1.652
3.063GlyLys: 3.063 ± 0.725
6.891GlyLeu: 6.891 ± 1.497
1.787GlyMet: 1.787 ± 0.579
3.063GlyAsn: 3.063 ± 0.783
1.531GlyPro: 1.531 ± 0.882
1.531GlyGln: 1.531 ± 0.405
2.297GlyArg: 2.297 ± 0.467
4.594GlySer: 4.594 ± 0.886
3.573GlyThr: 3.573 ± 0.868
4.594GlyVal: 4.594 ± 1.143
1.531GlyTrp: 1.531 ± 0.602
2.042GlyTyr: 2.042 ± 0.665
0.0GlyXaa: 0.0 ± 0.0
His
1.021HisAla: 1.021 ± 0.529
0.766HisCys: 0.766 ± 0.391
1.531HisAsp: 1.531 ± 0.392
1.276HisGlu: 1.276 ± 0.57
0.766HisPhe: 0.766 ± 0.438
1.276HisGly: 1.276 ± 0.589
0.51HisHis: 0.51 ± 0.292
1.787HisIle: 1.787 ± 0.308
1.531HisLys: 1.531 ± 0.392
2.042HisLeu: 2.042 ± 0.431
0.766HisMet: 0.766 ± 0.464
1.531HisAsn: 1.531 ± 0.425
0.766HisPro: 0.766 ± 0.438
0.51HisGln: 0.51 ± 0.461
1.531HisArg: 1.531 ± 0.425
1.531HisSer: 1.531 ± 0.717
0.255HisThr: 0.255 ± 0.39
2.042HisVal: 2.042 ± 0.524
0.766HisTrp: 0.766 ± 0.733
0.766HisTyr: 0.766 ± 0.266
0.0HisXaa: 0.0 ± 0.0
Ile
2.808IleAla: 2.808 ± 0.795
0.766IleCys: 0.766 ± 0.285
4.084IleAsp: 4.084 ± 1.078
3.828IleGlu: 3.828 ± 0.705
2.042IlePhe: 2.042 ± 0.461
4.084IleGly: 4.084 ± 0.626
1.531IleHis: 1.531 ± 0.574
3.318IleIle: 3.318 ± 0.849
5.87IleLys: 5.87 ± 0.776
3.573IleLeu: 3.573 ± 0.666
2.552IleMet: 2.552 ± 0.953
3.063IleAsn: 3.063 ± 0.76
3.573IlePro: 3.573 ± 0.929
2.042IleGln: 2.042 ± 0.39
3.063IleArg: 3.063 ± 0.6
6.126IleSer: 6.126 ± 1.477
4.849IleThr: 4.849 ± 0.691
3.318IleVal: 3.318 ± 1.177
1.276IleTrp: 1.276 ± 0.472
2.042IleTyr: 2.042 ± 0.501
0.0IleXaa: 0.0 ± 0.0
Lys
3.063LysAla: 3.063 ± 0.344
0.51LysCys: 0.51 ± 0.378
3.828LysAsp: 3.828 ± 1.07
2.552LysGlu: 2.552 ± 0.75
1.276LysPhe: 1.276 ± 0.472
4.339LysGly: 4.339 ± 1.008
0.51LysHis: 0.51 ± 0.292
3.573LysIle: 3.573 ± 0.944
4.339LysLys: 4.339 ± 1.326
6.126LysLeu: 6.126 ± 1.19
3.573LysMet: 3.573 ± 0.638
2.552LysAsn: 2.552 ± 0.998
2.552LysPro: 2.552 ± 0.76
1.276LysGln: 1.276 ± 0.741
4.339LysArg: 4.339 ± 1.03
6.126LysSer: 6.126 ± 1.345
4.084LysThr: 4.084 ± 0.559
4.084LysVal: 4.084 ± 0.64
0.255LysTrp: 0.255 ± 0.146
1.787LysTyr: 1.787 ± 0.792
0.0LysXaa: 0.0 ± 0.0
Leu
5.105LeuAla: 5.105 ± 1.639
2.808LeuCys: 2.808 ± 0.784
5.615LeuAsp: 5.615 ± 2.045
5.36LeuGlu: 5.36 ± 0.81
3.063LeuPhe: 3.063 ± 1.447
6.636LeuGly: 6.636 ± 1.184
1.787LeuHis: 1.787 ± 0.78
5.105LeuIle: 5.105 ± 1.195
7.657LeuLys: 7.657 ± 1.661
11.741LeuLeu: 11.741 ± 2.007
2.808LeuMet: 2.808 ± 0.983
6.891LeuAsn: 6.891 ± 1.131
5.105LeuPro: 5.105 ± 1.695
3.063LeuGln: 3.063 ± 0.804
5.87LeuArg: 5.87 ± 1.081
9.954LeuSer: 9.954 ± 1.827
6.636LeuThr: 6.636 ± 1.106
5.105LeuVal: 5.105 ± 1.231
0.766LeuTrp: 0.766 ± 0.266
4.594LeuTyr: 4.594 ± 1.217
0.0LeuXaa: 0.0 ± 0.0
Met
1.531MetAla: 1.531 ± 0.537
1.021MetCys: 1.021 ± 0.666
2.042MetAsp: 2.042 ± 0.929
2.297MetGlu: 2.297 ± 1.065
1.276MetPhe: 1.276 ± 0.477
0.766MetGly: 0.766 ± 0.266
0.51MetHis: 0.51 ± 0.461
3.573MetIle: 3.573 ± 0.805
2.042MetLys: 2.042 ± 0.441
3.318MetLeu: 3.318 ± 0.644
2.297MetMet: 2.297 ± 0.541
1.531MetAsn: 1.531 ± 0.501
0.766MetPro: 0.766 ± 0.285
0.766MetGln: 0.766 ± 0.433
3.573MetArg: 3.573 ± 0.94
2.808MetSer: 2.808 ± 0.74
1.787MetThr: 1.787 ± 0.503
0.766MetVal: 0.766 ± 0.392
0.51MetTrp: 0.51 ± 0.243
0.255MetTyr: 0.255 ± 0.146
0.0MetXaa: 0.0 ± 0.0
Asn
3.318AsnAla: 3.318 ± 1.065
1.021AsnCys: 1.021 ± 0.261
0.766AsnAsp: 0.766 ± 0.389
2.552AsnGlu: 2.552 ± 0.482
1.021AsnPhe: 1.021 ± 0.426
2.297AsnGly: 2.297 ± 0.529
2.042AsnHis: 2.042 ± 0.921
3.063AsnIle: 3.063 ± 0.848
2.808AsnLys: 2.808 ± 0.484
6.126AsnLeu: 6.126 ± 2.125
0.766AsnMet: 0.766 ± 0.266
1.531AsnAsn: 1.531 ± 0.426
3.828AsnPro: 3.828 ± 0.462
3.063AsnGln: 3.063 ± 0.786
2.552AsnArg: 2.552 ± 0.803
3.573AsnSer: 3.573 ± 0.42
2.297AsnThr: 2.297 ± 0.723
3.828AsnVal: 3.828 ± 1.058
0.255AsnTrp: 0.255 ± 0.299
2.552AsnTyr: 2.552 ± 0.566
0.0AsnXaa: 0.0 ± 0.0
Pro
3.828ProAla: 3.828 ± 1.336
0.0ProCys: 0.0 ± 0.0
3.573ProAsp: 3.573 ± 1.34
3.573ProGlu: 3.573 ± 0.666
0.51ProPhe: 0.51 ± 0.243
1.787ProGly: 1.787 ± 0.743
2.297ProHis: 2.297 ± 0.93
3.573ProIle: 3.573 ± 0.976
2.042ProLys: 2.042 ± 0.617
5.615ProLeu: 5.615 ± 2.039
1.276ProMet: 1.276 ± 0.461
1.787ProAsn: 1.787 ± 0.97
2.552ProPro: 2.552 ± 1.251
1.021ProGln: 1.021 ± 0.402
1.787ProArg: 1.787 ± 0.326
3.318ProSer: 3.318 ± 0.877
4.339ProThr: 4.339 ± 0.242
3.573ProVal: 3.573 ± 0.901
0.255ProTrp: 0.255 ± 0.272
1.021ProTyr: 1.021 ± 0.402
0.0ProXaa: 0.0 ± 0.0
Gln
1.787GlnAla: 1.787 ± 0.576
0.255GlnCys: 0.255 ± 0.299
1.531GlnAsp: 1.531 ± 0.321
1.787GlnGlu: 1.787 ± 0.525
0.766GlnPhe: 0.766 ± 0.266
1.531GlnGly: 1.531 ± 0.683
0.51GlnHis: 0.51 ± 0.292
1.276GlnIle: 1.276 ± 0.428
1.531GlnLys: 1.531 ± 0.673
3.573GlnLeu: 3.573 ± 0.535
0.51GlnMet: 0.51 ± 0.532
1.276GlnAsn: 1.276 ± 0.407
0.766GlnPro: 0.766 ± 0.321
1.276GlnGln: 1.276 ± 1.163
2.297GlnArg: 2.297 ± 0.812
2.042GlnSer: 2.042 ± 1.05
2.042GlnThr: 2.042 ± 0.972
1.021GlnVal: 1.021 ± 0.519
0.255GlnTrp: 0.255 ± 0.146
0.766GlnTyr: 0.766 ± 0.29
0.0GlnXaa: 0.0 ± 0.0
Arg
4.849ArgAla: 4.849 ± 1.575
1.021ArgCys: 1.021 ± 0.391
1.021ArgAsp: 1.021 ± 0.584
3.828ArgGlu: 3.828 ± 0.751
1.021ArgPhe: 1.021 ± 0.584
2.552ArgGly: 2.552 ± 0.57
1.021ArgHis: 1.021 ± 0.871
2.042ArgIle: 2.042 ± 0.656
3.318ArgLys: 3.318 ± 0.662
5.615ArgLeu: 5.615 ± 1.108
1.531ArgMet: 1.531 ± 0.683
2.808ArgAsn: 2.808 ± 0.801
2.042ArgPro: 2.042 ± 0.651
1.531ArgGln: 1.531 ± 0.405
3.063ArgArg: 3.063 ± 0.754
3.828ArgSer: 3.828 ± 1.547
3.063ArgThr: 3.063 ± 1.229
5.36ArgVal: 5.36 ± 1.016
1.531ArgTrp: 1.531 ± 0.602
3.063ArgTyr: 3.063 ± 1.051
0.0ArgXaa: 0.0 ± 0.0
Ser
4.339SerAla: 4.339 ± 1.364
2.297SerCys: 2.297 ± 1.202
4.594SerAsp: 4.594 ± 1.056
6.126SerGlu: 6.126 ± 0.927
2.552SerPhe: 2.552 ± 0.77
5.36SerGly: 5.36 ± 1.473
1.531SerHis: 1.531 ± 0.343
3.828SerIle: 3.828 ± 0.674
3.318SerLys: 3.318 ± 0.936
8.678SerLeu: 8.678 ± 0.984
3.318SerMet: 3.318 ± 0.841
5.36SerAsn: 5.36 ± 1.438
3.573SerPro: 3.573 ± 1.26
2.042SerGln: 2.042 ± 0.731
4.339SerArg: 4.339 ± 1.557
7.657SerSer: 7.657 ± 1.159
4.339SerThr: 4.339 ± 1.373
7.147SerVal: 7.147 ± 2.159
0.766SerTrp: 0.766 ± 0.266
3.828SerTyr: 3.828 ± 0.396
0.0SerXaa: 0.0 ± 0.0
Thr
4.594ThrAla: 4.594 ± 1.285
0.766ThrCys: 0.766 ± 0.392
2.042ThrAsp: 2.042 ± 0.843
2.552ThrGlu: 2.552 ± 0.818
3.063ThrPhe: 3.063 ± 0.837
4.084ThrGly: 4.084 ± 1.135
1.276ThrHis: 1.276 ± 0.423
4.339ThrIle: 4.339 ± 0.933
3.828ThrLys: 3.828 ± 0.558
5.87ThrLeu: 5.87 ± 1.035
1.787ThrMet: 1.787 ± 0.793
1.021ThrAsn: 1.021 ± 0.584
2.297ThrPro: 2.297 ± 0.354
2.042ThrGln: 2.042 ± 0.367
2.808ThrArg: 2.808 ± 0.795
4.594ThrSer: 4.594 ± 1.474
3.063ThrThr: 3.063 ± 0.923
3.828ThrVal: 3.828 ± 0.919
2.042ThrTrp: 2.042 ± 0.656
1.276ThrTyr: 1.276 ± 0.308
0.0ThrXaa: 0.0 ± 0.0
Val
4.084ValAla: 4.084 ± 1.911
2.808ValCys: 2.808 ± 0.652
3.573ValAsp: 3.573 ± 1.402
3.573ValGlu: 3.573 ± 1.032
2.297ValPhe: 2.297 ± 0.917
3.318ValGly: 3.318 ± 1.267
0.766ValHis: 0.766 ± 0.266
4.594ValIle: 4.594 ± 0.895
2.808ValLys: 2.808 ± 0.905
6.126ValLeu: 6.126 ± 1.08
2.808ValMet: 2.808 ± 1.026
3.828ValAsn: 3.828 ± 1.713
4.339ValPro: 4.339 ± 0.954
0.255ValGln: 0.255 ± 0.483
3.828ValArg: 3.828 ± 1.139
7.912ValSer: 7.912 ± 1.074
3.828ValThr: 3.828 ± 0.953
2.297ValVal: 2.297 ± 1.029
1.021ValTrp: 1.021 ± 0.364
2.297ValTyr: 2.297 ± 0.467
0.0ValXaa: 0.0 ± 0.0
Trp
1.021TrpAla: 1.021 ± 0.354
0.51TrpCys: 0.51 ± 0.292
0.51TrpAsp: 0.51 ± 0.243
0.255TrpGlu: 0.255 ± 0.146
0.51TrpPhe: 0.51 ± 0.435
1.276TrpGly: 1.276 ± 0.472
0.0TrpHis: 0.0 ± 0.0
0.766TrpIle: 0.766 ± 0.438
1.531TrpLys: 1.531 ± 0.602
1.021TrpLeu: 1.021 ± 0.584
0.51TrpMet: 0.51 ± 0.598
1.531TrpAsn: 1.531 ± 0.574
0.255TrpPro: 0.255 ± 0.146
0.51TrpGln: 0.51 ± 0.539
1.021TrpArg: 1.021 ± 0.584
1.276TrpSer: 1.276 ± 0.308
0.255TrpThr: 0.255 ± 0.146
1.787TrpVal: 1.787 ± 0.452
0.255TrpTrp: 0.255 ± 0.146
0.51TrpTyr: 0.51 ± 0.444
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.297TyrAla: 2.297 ± 0.824
0.51TyrCys: 0.51 ± 0.378
3.063TyrAsp: 3.063 ± 0.737
1.787TyrGlu: 1.787 ± 0.611
1.787TyrPhe: 1.787 ± 0.691
1.787TyrGly: 1.787 ± 0.542
1.787TyrHis: 1.787 ± 0.738
1.787TyrIle: 1.787 ± 0.793
2.042TyrLys: 2.042 ± 0.782
4.084TyrLeu: 4.084 ± 1.107
1.021TyrMet: 1.021 ± 0.365
1.021TyrAsn: 1.021 ± 0.333
1.276TyrPro: 1.276 ± 0.55
0.51TyrGln: 0.51 ± 0.534
1.021TyrArg: 1.021 ± 0.424
1.787TyrSer: 1.787 ± 0.74
1.276TyrThr: 1.276 ± 0.57
3.573TyrVal: 3.573 ± 1.003
0.255TyrTrp: 0.255 ± 0.146
0.255TyrTyr: 0.255 ± 0.146
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (3919 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski