Turnip curly top virus (isolate Turnip/South Africa/B11/2006)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Turncurtovirus; Turnip curly top virus

Average proteome isoelectric point is 7.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D8WZ27|D8WZ27_TCTVB Capsid protein OS=Turnip curly top virus (isolate Turnip/South Africa/B11/2006) OX=1559365 PE=3 SV=1
MM1 pKa = 7.47IWRR4 pKa = 11.84IAKK7 pKa = 9.52DD8 pKa = 3.65DD9 pKa = 3.4KK10 pKa = 10.67RR11 pKa = 11.84VRR13 pKa = 11.84AFRR16 pKa = 11.84YY17 pKa = 8.4KK18 pKa = 10.17KK19 pKa = 9.85RR20 pKa = 11.84RR21 pKa = 11.84FYY23 pKa = 11.29SLSEE27 pKa = 3.99YY28 pKa = 10.94LLAPLATHH36 pKa = 6.96LRR38 pKa = 11.84LARR41 pKa = 11.84ILPEE45 pKa = 4.29KK46 pKa = 9.8CWSVVPAYY54 pKa = 9.53TDD56 pKa = 3.16EE57 pKa = 4.98AYY59 pKa = 11.03SFLFMLKK66 pKa = 10.15EE67 pKa = 3.96EE68 pKa = 4.39TRR70 pKa = 11.84TPFQILKK77 pKa = 10.45DD78 pKa = 3.52EE79 pKa = 4.46WNVEE83 pKa = 4.27FKK85 pKa = 10.46EE86 pKa = 4.41AEE88 pKa = 4.11VALSRR93 pKa = 11.84LRR95 pKa = 11.84LSTEE99 pKa = 3.8DD100 pKa = 3.22TGEE103 pKa = 3.96EE104 pKa = 4.08TGGEE108 pKa = 4.14EE109 pKa = 5.2SPVQQSSPVQSSSCEE124 pKa = 3.92TT125 pKa = 3.49

Molecular weight: 14.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D8WZ29|D8WZ29_TCTVB C2 OS=Turnip curly top virus (isolate Turnip/South Africa/B11/2006) OX=1559365 PE=3 SV=1
MM1 pKa = 7.39SVVRR5 pKa = 11.84DD6 pKa = 3.8LRR8 pKa = 11.84TGEE11 pKa = 4.83PITHH15 pKa = 6.2RR16 pKa = 11.84QSTIGTYY23 pKa = 9.16IHH25 pKa = 5.99QVPNPFHH32 pKa = 6.97LKK34 pKa = 10.29LISWDD39 pKa = 3.4HH40 pKa = 5.56QEE42 pKa = 4.21NGFFNIRR49 pKa = 11.84LQLRR53 pKa = 11.84FNYY56 pKa = 10.1NLRR59 pKa = 11.84KK60 pKa = 9.6QLGLHH65 pKa = 5.5MAWIEE70 pKa = 3.88FTVLGRR76 pKa = 11.84HH77 pKa = 6.14RR78 pKa = 11.84SLTGHH83 pKa = 7.2RR84 pKa = 11.84FTTIFLKK91 pKa = 10.8RR92 pKa = 11.84LLFYY96 pKa = 10.99LNNLGIISLNLVINGISHH114 pKa = 6.86VLFKK118 pKa = 10.82DD119 pKa = 4.25FKK121 pKa = 10.57FVEE124 pKa = 4.44SVINQEE130 pKa = 3.57YY131 pKa = 8.8RR132 pKa = 11.84VAMKK136 pKa = 10.76EE137 pKa = 3.68EE138 pKa = 5.1FYY140 pKa = 11.56

Molecular weight: 16.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1138

85

371

189.7

21.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.482 ± 0.977

1.318 ± 0.254

4.833 ± 0.826

5.712 ± 1.029

4.833 ± 0.689

5.712 ± 0.611

3.427 ± 0.714

6.942 ± 1.068

6.678 ± 0.876

7.645 ± 1.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.373 ± 0.786

5.097 ± 0.682

5.624 ± 0.649

3.954 ± 0.428

6.415 ± 0.93

8.084 ± 1.364

6.151 ± 0.862

4.921 ± 0.504

1.933 ± 0.408

3.866 ± 0.715
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski