Candidatus Syntrophoarchaeum butanivorans

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; unclassified Methanosarcinales; ANME-2 cluster; Candidatus Syntrophoarchaeum

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1592 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1F2P337|A0A1F2P337_9EURY Uncharacterized protein OS=Candidatus Syntrophoarchaeum butanivorans OX=1839936 GN=SBU_001370 PE=4 SV=1
MM1 pKa = 8.01DD2 pKa = 4.12NFVRR6 pKa = 11.84NSLILLVVCTAVMCVAAYY24 pKa = 10.07AGYY27 pKa = 10.84ASGAGMEE34 pKa = 4.34GTDD37 pKa = 4.84GIVEE41 pKa = 3.91EE42 pKa = 5.11HH43 pKa = 6.48AASTGGLEE51 pKa = 4.88AVDD54 pKa = 3.18IVPNVGAFGDD64 pKa = 3.4MGEE67 pKa = 4.39YY68 pKa = 10.55VGFTLAGIIAGFIFGYY84 pKa = 9.6FWIDD88 pKa = 2.79IKK90 pKa = 11.29EE91 pKa = 4.41GGGQRR96 pKa = 11.84AA97 pKa = 3.31

Molecular weight: 9.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1F2P420|A0A1F2P420_9EURY Acetoin utilization protein AcuC OS=Candidatus Syntrophoarchaeum butanivorans OX=1839936 GN=ENI32_00880 PE=4 SV=1
MM1 pKa = 7.17GKK3 pKa = 10.23KK4 pKa = 9.18MKK6 pKa = 10.33GKK8 pKa = 10.23KK9 pKa = 9.37LRR11 pKa = 11.84LAKK14 pKa = 9.97AVKK17 pKa = 9.1QNRR20 pKa = 11.84RR21 pKa = 11.84VPVWVIVKK29 pKa = 7.42TNRR32 pKa = 11.84GVLTHH37 pKa = 6.3PKK39 pKa = 8.75RR40 pKa = 11.84RR41 pKa = 11.84NWRR44 pKa = 11.84RR45 pKa = 11.84SSLKK49 pKa = 10.17VV50 pKa = 3.13

Molecular weight: 5.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1592

0

1592

442627

34

2514

278.0

31.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.028 ± 0.067

1.258 ± 0.034

5.96 ± 0.043

8.627 ± 0.06

3.738 ± 0.046

8.091 ± 0.06

1.771 ± 0.025

8.389 ± 0.05

5.465 ± 0.056

9.549 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.773 ± 0.028

2.862 ± 0.04

4.125 ± 0.038

1.784 ± 0.027

6.965 ± 0.066

5.541 ± 0.046

4.616 ± 0.05

7.4 ± 0.049

0.969 ± 0.021

3.09 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski