Trichinella patagoniensis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18337 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0ZRB5|A0A0V0ZRB5_9BILA Orcokinin peptides type A OS=Trichinella patagoniensis OX=990121 GN=T12_6551 PE=4 SV=1
MM1 pKa = 7.78EE2 pKa = 5.25DD3 pKa = 2.73WKK5 pKa = 11.11IFDD8 pKa = 5.19FNDD11 pKa = 3.42LDD13 pKa = 3.88LMLWLVVLVIFLHH26 pKa = 4.96MARR29 pKa = 11.84YY30 pKa = 9.32LLDD33 pKa = 3.67YY34 pKa = 11.4LEE36 pKa = 4.62TCQEE40 pKa = 4.05KK41 pKa = 11.09EE42 pKa = 4.31EE43 pKa = 5.06LIQLLNEE50 pKa = 3.94THH52 pKa = 6.55YY53 pKa = 11.81SMQQVEE59 pKa = 4.75QIVEE63 pKa = 4.18HH64 pKa = 5.41QQSVDD69 pKa = 3.12NKK71 pKa = 10.54DD72 pKa = 4.01YY73 pKa = 11.01IGEE76 pKa = 4.11PYY78 pKa = 10.23IFYY81 pKa = 11.08NPDD84 pKa = 2.97KK85 pKa = 11.16DD86 pKa = 4.4VFTLQIDD93 pKa = 4.34FNNLSEE99 pKa = 4.58DD100 pKa = 3.47NCIKK104 pKa = 10.69VCLAVWNALVNIDD117 pKa = 4.99SEE119 pKa = 4.61DD120 pKa = 3.61DD121 pKa = 3.76SEE123 pKa = 5.38EE124 pKa = 4.4SDD126 pKa = 3.61EE127 pKa = 4.16QQ128 pKa = 3.8

Molecular weight: 15.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0YRH3|A0A0V0YRH3_9BILA Heat shock 70 kDa protein 2 (Fragment) OS=Trichinella patagoniensis OX=990121 GN=UMS2 PE=3 SV=1
MM1 pKa = 7.37RR2 pKa = 11.84TTRR5 pKa = 11.84SRR7 pKa = 11.84SRR9 pKa = 11.84TARR12 pKa = 11.84SRR14 pKa = 11.84SRR16 pKa = 11.84TTRR19 pKa = 11.84SRR21 pKa = 11.84SRR23 pKa = 11.84TTRR26 pKa = 11.84SRR28 pKa = 11.84SRR30 pKa = 11.84TTRR33 pKa = 11.84SRR35 pKa = 11.84SRR37 pKa = 11.84TTRR40 pKa = 11.84SRR42 pKa = 3.15

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14635

3702

18337

8154253

30

14556

444.7

50.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.421 ± 0.016

2.668 ± 0.018

5.229 ± 0.015

6.3 ± 0.023

4.584 ± 0.013

5.013 ± 0.019

2.466 ± 0.008

5.551 ± 0.015

5.937 ± 0.02

9.704 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.406 ± 0.008

4.994 ± 0.014

4.353 ± 0.018

4.275 ± 0.015

5.665 ± 0.02

8.358 ± 0.021

5.325 ± 0.014

6.439 ± 0.015

1.212 ± 0.007

3.096 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski