Desulfacinum hydrothermale DSM 13146

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Desulfacinum; Desulfacinum hydrothermale

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3262 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W1X0J0|A0A1W1X0J0_9DELT Uncharacterized protein OS=Desulfacinum hydrothermale DSM 13146 OX=1121390 GN=SAMN02746041_00270 PE=4 SV=1
MM1 pKa = 7.81RR2 pKa = 11.84KK3 pKa = 9.32NLVVLLAVLMAVAIALPAFAVDD25 pKa = 4.18FKK27 pKa = 10.63YY28 pKa = 11.02GGMMRR33 pKa = 11.84VRR35 pKa = 11.84WYY37 pKa = 10.73SYY39 pKa = 11.51NNFDD43 pKa = 4.46GTDD46 pKa = 3.54DD47 pKa = 4.83ADD49 pKa = 3.54DD50 pKa = 3.88HH51 pKa = 7.25ANYY54 pKa = 10.02FDD56 pKa = 3.33QRR58 pKa = 11.84VRR60 pKa = 11.84MYY62 pKa = 8.27FTFVASEE69 pKa = 3.81NLQLVTKK76 pKa = 10.11WEE78 pKa = 4.03EE79 pKa = 4.08DD80 pKa = 3.81NVWGAKK86 pKa = 10.26GGDD89 pKa = 3.39RR90 pKa = 11.84DD91 pKa = 3.98LTHH94 pKa = 6.61ATSDD98 pKa = 3.41FRR100 pKa = 11.84DD101 pKa = 4.25PYY103 pKa = 11.82DD104 pKa = 3.48MEE106 pKa = 4.54TKK108 pKa = 10.38NVYY111 pKa = 10.74LDD113 pKa = 3.9FNIPNTPIRR122 pKa = 11.84AKK124 pKa = 10.51LGQQGFGLFGGRR136 pKa = 11.84IIAEE140 pKa = 4.7DD141 pKa = 3.41YY142 pKa = 10.32TGAKK146 pKa = 10.06FSMPFDD152 pKa = 3.84PVKK155 pKa = 10.45VTLGYY160 pKa = 9.99IAEE163 pKa = 4.22QNVDD167 pKa = 3.46YY168 pKa = 11.09SSEE171 pKa = 3.84KK172 pKa = 11.05DD173 pKa = 3.57NVDD176 pKa = 2.52IYY178 pKa = 11.43YY179 pKa = 10.48LQLQYY184 pKa = 11.85ANGPFSGEE192 pKa = 4.39LIGLYY197 pKa = 9.94QDD199 pKa = 4.34GSDD202 pKa = 3.38TAVSLKK208 pKa = 9.91TEE210 pKa = 4.12YY211 pKa = 11.06ADD213 pKa = 4.5PGVDD217 pKa = 3.07AQGRR221 pKa = 11.84EE222 pKa = 4.22TYY224 pKa = 10.42DD225 pKa = 3.08GYY227 pKa = 9.68TFEE230 pKa = 5.94DD231 pKa = 3.05NHH233 pKa = 7.91LFDD236 pKa = 5.97LGVKK240 pKa = 9.85LAYY243 pKa = 10.34SSDD246 pKa = 3.35MFKK249 pKa = 10.48ATVHH253 pKa = 6.49FIKK256 pKa = 10.83NFGSVDD262 pKa = 4.05LNGEE266 pKa = 3.99SADD269 pKa = 3.69YY270 pKa = 10.82KK271 pKa = 11.08GWFLGADD278 pKa = 3.26VAIPVNDD285 pKa = 3.61FTFGLGGFYY294 pKa = 7.96TTGQDD299 pKa = 3.34EE300 pKa = 4.6GDD302 pKa = 4.33DD303 pKa = 3.83DD304 pKa = 4.8VEE306 pKa = 5.03GYY308 pKa = 10.29VYY310 pKa = 10.43PGAVGDD316 pKa = 3.85SFYY319 pKa = 10.25WAEE322 pKa = 3.68IMGFGVLDD330 pKa = 4.13DD331 pKa = 4.04MTPRR335 pKa = 11.84AYY337 pKa = 9.29TGYY340 pKa = 9.22PGAGEE345 pKa = 4.0YY346 pKa = 8.71TAGGNPSNLYY356 pKa = 8.99TLYY359 pKa = 11.2ASVDD363 pKa = 3.42WQALEE368 pKa = 3.79ATKK371 pKa = 10.78LHH373 pKa = 6.11LAYY376 pKa = 10.3YY377 pKa = 9.72YY378 pKa = 10.69LGTAEE383 pKa = 5.03DD384 pKa = 4.19VVANAATGEE393 pKa = 4.16KK394 pKa = 9.69DD395 pKa = 3.38DD396 pKa = 4.38SVGSEE401 pKa = 3.49VDD403 pKa = 3.96FRR405 pKa = 11.84LTQKK409 pKa = 10.38VVDD412 pKa = 4.32GLNLDD417 pKa = 3.83VIGAYY422 pKa = 10.49LFADD426 pKa = 4.04DD427 pKa = 5.34AFSGTKK433 pKa = 10.29DD434 pKa = 3.71DD435 pKa = 4.34DD436 pKa = 3.85DD437 pKa = 6.18AYY439 pKa = 10.59EE440 pKa = 4.17VGARR444 pKa = 11.84LQWAFF449 pKa = 3.54

Molecular weight: 49.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W1XIP4|A0A1W1XIP4_9DELT Magnesium chelatase family protein OS=Desulfacinum hydrothermale DSM 13146 OX=1121390 GN=SAMN02746041_01807 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.19QPSNIKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 7.89RR14 pKa = 11.84THH16 pKa = 5.96GFLVRR21 pKa = 11.84MSTKK25 pKa = 10.41AGRR28 pKa = 11.84QVIKK32 pKa = 10.42RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.74GRR39 pKa = 11.84KK40 pKa = 8.66RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3262

0

3262

1058542

39

2151

324.5

36.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.607 ± 0.038

1.347 ± 0.018

5.239 ± 0.028

6.699 ± 0.041

3.805 ± 0.028

7.878 ± 0.036

2.424 ± 0.019

4.839 ± 0.032

4.101 ± 0.035

10.862 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.395 ± 0.02

2.387 ± 0.021

5.295 ± 0.025

3.628 ± 0.025

7.81 ± 0.047

5.038 ± 0.028

4.67 ± 0.024

8.027 ± 0.037

1.369 ± 0.019

2.579 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski