Xylanimonas oleitrophica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae; Xylanimonas

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2W5WXY7|A0A2W5WXY7_9MICO Uncharacterized N-acetyltransferase DNL40_02185 OS=Xylanimonas oleitrophica OX=2607479 GN=DNL40_02185 PE=3 SV=1
MM1 pKa = 7.43IRR3 pKa = 11.84RR4 pKa = 11.84HH5 pKa = 5.3SAAKK9 pKa = 10.28GLALAAALGLGLAACSTSAEE29 pKa = 4.22GSGGEE34 pKa = 4.38GSDD37 pKa = 3.33SAEE40 pKa = 3.83PLVIGTILPITGTLAFLGPPEE61 pKa = 4.03VAGVGLAVDD70 pKa = 5.78DD71 pKa = 4.17INEE74 pKa = 4.31AGGVLGNDD82 pKa = 3.83VSVEE86 pKa = 3.86WGDD89 pKa = 4.39SGDD92 pKa = 3.79TTDD95 pKa = 4.95LSVAGGTATDD105 pKa = 5.24LIGKK109 pKa = 8.41GVSAVVGAASSGVSLAVVDD128 pKa = 4.01QFEE131 pKa = 4.48EE132 pKa = 4.36AGVMQISPANTATDD146 pKa = 3.94LSGYY150 pKa = 10.78GDD152 pKa = 4.22FFARR156 pKa = 11.84TAPPDD161 pKa = 4.04TVQGAALGSQILDD174 pKa = 3.87DD175 pKa = 3.5GHH177 pKa = 8.15LRR179 pKa = 11.84VGFLVQNEE187 pKa = 4.41AYY189 pKa = 10.61GNGLRR194 pKa = 11.84DD195 pKa = 3.76NVQKK199 pKa = 10.83AIEE202 pKa = 4.43SGGGEE207 pKa = 4.02AVYY210 pKa = 10.24GATGAGQEE218 pKa = 4.22FAPGEE223 pKa = 4.51TNFGAQVTALLATQPDD239 pKa = 4.88AIAIIAFEE247 pKa = 4.15EE248 pKa = 4.32TVAIINEE255 pKa = 4.31LVAQGWSFSGTTYY268 pKa = 10.59FCDD271 pKa = 4.05GNLSNYY277 pKa = 9.6GDD279 pKa = 3.62QFDD282 pKa = 4.38AGTLAGVKK290 pKa = 8.92GTLPGAQADD299 pKa = 3.98EE300 pKa = 4.63EE301 pKa = 4.37FQQRR305 pKa = 11.84LNDD308 pKa = 3.49WYY310 pKa = 11.24SEE312 pKa = 4.23NEE314 pKa = 4.11SGTLNDD320 pKa = 3.14YY321 pKa = 11.13SYY323 pKa = 11.51AAEE326 pKa = 4.7SYY328 pKa = 10.76DD329 pKa = 3.61ATILAALAAVRR340 pKa = 11.84GGATDD345 pKa = 3.68GQTIADD351 pKa = 4.09NIKK354 pKa = 10.22AVSGAEE360 pKa = 3.88GGTEE364 pKa = 3.58VTTFAEE370 pKa = 4.7GVEE373 pKa = 3.95ALEE376 pKa = 4.75NGDD379 pKa = 3.92EE380 pKa = 3.72IHH382 pKa = 6.42YY383 pKa = 10.0VGKK386 pKa = 10.72AGIGPLNEE394 pKa = 4.58SNDD397 pKa = 3.5PSSAFIGIYY406 pKa = 10.16EE407 pKa = 4.2YY408 pKa = 11.52GDD410 pKa = 4.15DD411 pKa = 3.61NTYY414 pKa = 9.45TYY416 pKa = 11.0SRR418 pKa = 11.84SVEE421 pKa = 4.11GKK423 pKa = 9.68AA424 pKa = 4.1

Molecular weight: 42.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2W5YCU3|A0A2W5YCU3_9MICO Alpha/beta hydrolase OS=Xylanimonas oleitrophica OX=2607479 GN=DNL40_13520 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3108

0

3108

1032422

30

4136

332.2

35.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.699 ± 0.075

0.521 ± 0.012

6.126 ± 0.044

5.687 ± 0.046

2.453 ± 0.029

9.648 ± 0.045

2.105 ± 0.027

2.635 ± 0.036

1.486 ± 0.03

10.154 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.578 ± 0.019

1.433 ± 0.026

6.106 ± 0.039

2.859 ± 0.025

7.879 ± 0.058

4.806 ± 0.029

6.207 ± 0.049

10.317 ± 0.053

1.517 ± 0.022

1.784 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski