Amino acid dipepetide frequency for Mungbean yellow mosaic virus (strain Vigna) (MYMV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.23AlaAla: 4.23 ± 0.789
1.208AlaCys: 1.208 ± 0.673
3.021AlaAsp: 3.021 ± 0.977
3.021AlaGlu: 3.021 ± 1.589
3.021AlaPhe: 3.021 ± 0.663
0.604AlaGly: 0.604 ± 0.546
0.604AlaHis: 0.604 ± 0.641
3.021AlaIle: 3.021 ± 0.97
6.647AlaLys: 6.647 ± 1.666
5.438AlaLeu: 5.438 ± 2.091
0.604AlaMet: 0.604 ± 0.535
1.208AlaAsn: 1.208 ± 0.619
1.813AlaPro: 1.813 ± 1.047
3.625AlaGln: 3.625 ± 1.393
1.813AlaArg: 1.813 ± 0.942
6.647AlaSer: 6.647 ± 1.469
4.23AlaThr: 4.23 ± 1.97
1.208AlaVal: 1.208 ± 1.069
0.604AlaTrp: 0.604 ± 0.476
1.208AlaTyr: 1.208 ± 0.619
0.0AlaXaa: 0.0 ± 0.0
Cys
1.208CysAla: 1.208 ± 0.815
0.0CysCys: 0.0 ± 0.0
0.604CysAsp: 0.604 ± 0.574
1.208CysGlu: 1.208 ± 0.673
1.208CysPhe: 1.208 ± 0.839
2.417CysGly: 2.417 ± 0.986
0.604CysHis: 0.604 ± 0.739
0.0CysIle: 0.0 ± 0.0
0.604CysLys: 0.604 ± 0.546
0.604CysLeu: 0.604 ± 0.535
1.208CysMet: 1.208 ± 0.769
1.813CysAsn: 1.813 ± 1.007
1.813CysPro: 1.813 ± 0.875
1.208CysGln: 1.208 ± 0.815
1.813CysArg: 1.813 ± 0.802
1.208CysSer: 1.208 ± 1.148
1.208CysThr: 1.208 ± 0.723
1.813CysVal: 1.813 ± 1.103
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.021AspAla: 3.021 ± 1.34
0.0AspCys: 0.0 ± 0.0
1.813AspAsp: 1.813 ± 1.047
1.813AspGlu: 1.813 ± 0.621
3.625AspPhe: 3.625 ± 1.351
3.625AspGly: 3.625 ± 1.296
1.813AspHis: 1.813 ± 0.745
2.417AspIle: 2.417 ± 1.094
2.417AspLys: 2.417 ± 1.237
4.23AspLeu: 4.23 ± 0.976
0.604AspMet: 0.604 ± 0.576
3.021AspAsn: 3.021 ± 0.79
3.625AspPro: 3.625 ± 0.907
4.23AspGln: 4.23 ± 1.601
2.417AspArg: 2.417 ± 1.076
3.625AspSer: 3.625 ± 0.92
1.813AspThr: 1.813 ± 1.103
7.251AspVal: 7.251 ± 1.867
0.604AspTrp: 0.604 ± 0.476
2.417AspTyr: 2.417 ± 1.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.625GluAla: 3.625 ± 1.136
1.208GluCys: 1.208 ± 0.769
3.021GluAsp: 3.021 ± 1.337
3.625GluGlu: 3.625 ± 2.193
1.208GluPhe: 1.208 ± 0.951
2.417GluGly: 2.417 ± 0.818
0.0GluHis: 0.0 ± 0.0
1.813GluIle: 1.813 ± 1.1
3.021GluLys: 3.021 ± 0.829
3.021GluLeu: 3.021 ± 1.717
1.208GluMet: 1.208 ± 0.666
4.23GluAsn: 4.23 ± 1.614
3.625GluPro: 3.625 ± 1.335
2.417GluGln: 2.417 ± 1.012
1.813GluArg: 1.813 ± 0.942
0.604GluSer: 0.604 ± 0.574
3.625GluThr: 3.625 ± 2.116
3.021GluVal: 3.021 ± 1.53
0.604GluTrp: 0.604 ± 0.574
1.813GluTyr: 1.813 ± 1.092
0.0GluXaa: 0.0 ± 0.0
Phe
2.417PheAla: 2.417 ± 0.906
1.208PheCys: 1.208 ± 0.828
2.417PheAsp: 2.417 ± 0.965
1.813PheGlu: 1.813 ± 0.608
1.208PhePhe: 1.208 ± 0.651
2.417PheGly: 2.417 ± 1.445
0.604PheHis: 0.604 ± 0.476
2.417PheIle: 2.417 ± 1.155
3.625PheLys: 3.625 ± 0.88
2.417PheLeu: 2.417 ± 1.234
1.208PheMet: 1.208 ± 0.686
2.417PheAsn: 2.417 ± 0.804
2.417PhePro: 2.417 ± 1.248
2.417PheGln: 2.417 ± 0.758
3.021PheArg: 3.021 ± 1.523
4.834PheSer: 4.834 ± 1.318
0.604PheThr: 0.604 ± 0.535
1.813PheVal: 1.813 ± 1.327
1.208PheTrp: 1.208 ± 0.697
1.813PheTyr: 1.813 ± 1.006
0.0PheXaa: 0.0 ± 0.0
Gly
3.021GlyAla: 3.021 ± 1.111
1.813GlyCys: 1.813 ± 0.725
4.834GlyAsp: 4.834 ± 1.522
1.208GlyGlu: 1.208 ± 0.651
2.417GlyPhe: 2.417 ± 1.622
3.021GlyGly: 3.021 ± 0.897
1.208GlyHis: 1.208 ± 0.651
1.813GlyIle: 1.813 ± 0.608
5.438GlyLys: 5.438 ± 1.837
1.208GlyLeu: 1.208 ± 0.795
1.208GlyMet: 1.208 ± 0.861
1.813GlyAsn: 1.813 ± 1.231
4.23GlyPro: 4.23 ± 1.017
1.813GlyGln: 1.813 ± 1.189
3.021GlyArg: 3.021 ± 1.136
4.834GlySer: 4.834 ± 1.317
3.021GlyThr: 3.021 ± 1.262
2.417GlyVal: 2.417 ± 1.589
0.0GlyTrp: 0.0 ± 0.0
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.417HisAla: 2.417 ± 0.943
1.208HisCys: 1.208 ± 0.908
0.604HisAsp: 0.604 ± 0.546
0.604HisGlu: 0.604 ± 0.476
1.208HisPhe: 1.208 ± 0.697
2.417HisGly: 2.417 ± 1.002
1.208HisHis: 1.208 ± 0.84
2.417HisIle: 2.417 ± 0.996
1.813HisLys: 1.813 ± 0.874
2.417HisLeu: 2.417 ± 0.906
0.604HisMet: 0.604 ± 0.576
2.417HisAsn: 2.417 ± 1.034
1.208HisPro: 1.208 ± 0.815
1.208HisGln: 1.208 ± 0.828
2.417HisArg: 2.417 ± 0.905
3.021HisSer: 3.021 ± 1.428
1.813HisThr: 1.813 ± 1.248
2.417HisVal: 2.417 ± 1.043
0.0HisTrp: 0.0 ± 0.0
2.417HisTyr: 2.417 ± 1.099
0.0HisXaa: 0.0 ± 0.0
Ile
0.604IleAla: 0.604 ± 0.535
0.604IleCys: 0.604 ± 0.546
2.417IleAsp: 2.417 ± 1.159
2.417IleGlu: 2.417 ± 1.592
1.208IlePhe: 1.208 ± 0.951
1.208IleGly: 1.208 ± 0.772
0.604IleHis: 0.604 ± 0.574
1.208IleIle: 1.208 ± 0.697
5.438IleLys: 5.438 ± 1.354
4.834IleLeu: 4.834 ± 1.379
2.417IleMet: 2.417 ± 1.545
3.021IleAsn: 3.021 ± 1.087
1.208IlePro: 1.208 ± 0.815
1.813IleGln: 1.813 ± 1.481
6.042IleArg: 6.042 ± 1.57
6.647IleSer: 6.647 ± 1.113
1.813IleThr: 1.813 ± 0.961
4.834IleVal: 4.834 ± 1.483
1.813IleTrp: 1.813 ± 1.221
1.813IleTyr: 1.813 ± 0.78
0.0IleXaa: 0.0 ± 0.0
Lys
4.23LysAla: 4.23 ± 1.157
3.021LysCys: 3.021 ± 1.111
3.021LysAsp: 3.021 ± 1.152
3.625LysGlu: 3.625 ± 1.803
2.417LysPhe: 2.417 ± 0.976
3.021LysGly: 3.021 ± 1.364
2.417LysHis: 2.417 ± 0.788
2.417LysIle: 2.417 ± 1.118
3.021LysLys: 3.021 ± 1.249
10.272LysLeu: 10.272 ± 3.237
0.604LysMet: 0.604 ± 0.641
6.042LysAsn: 6.042 ± 1.592
4.834LysPro: 4.834 ± 1.673
0.604LysGln: 0.604 ± 0.476
3.625LysArg: 3.625 ± 1.713
5.438LysSer: 5.438 ± 0.978
2.417LysThr: 2.417 ± 0.813
4.23LysVal: 4.23 ± 0.968
0.0LysTrp: 0.0 ± 0.0
3.021LysTyr: 3.021 ± 0.663
0.0LysXaa: 0.0 ± 0.0
Leu
1.208LeuAla: 1.208 ± 0.815
1.208LeuCys: 1.208 ± 0.951
5.438LeuAsp: 5.438 ± 1.648
2.417LeuGlu: 2.417 ± 0.804
3.625LeuPhe: 3.625 ± 1.564
3.625LeuGly: 3.625 ± 1.202
3.625LeuHis: 3.625 ± 1.277
2.417LeuIle: 2.417 ± 0.998
8.459LeuLys: 8.459 ± 2.002
5.438LeuLeu: 5.438 ± 1.629
1.813LeuMet: 1.813 ± 0.916
4.23LeuAsn: 4.23 ± 1.725
4.23LeuPro: 4.23 ± 1.552
4.23LeuGln: 4.23 ± 1.919
4.834LeuArg: 4.834 ± 2.109
10.876LeuSer: 10.876 ± 1.454
6.647LeuThr: 6.647 ± 1.981
1.813LeuVal: 1.813 ± 0.892
1.208LeuTrp: 1.208 ± 0.619
4.834LeuTyr: 4.834 ± 2.226
0.0LeuXaa: 0.0 ± 0.0
Met
1.208MetAla: 1.208 ± 0.828
0.0MetCys: 0.0 ± 0.0
1.813MetAsp: 1.813 ± 0.784
2.417MetGlu: 2.417 ± 1.394
2.417MetPhe: 2.417 ± 0.989
1.813MetGly: 1.813 ± 0.621
1.813MetHis: 1.813 ± 1.231
0.604MetIle: 0.604 ± 0.64
1.208MetLys: 1.208 ± 0.826
3.021MetLeu: 3.021 ± 1.252
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
3.021MetPro: 3.021 ± 0.691
0.604MetGln: 0.604 ± 0.64
1.813MetArg: 1.813 ± 0.802
1.813MetSer: 1.813 ± 0.709
0.604MetThr: 0.604 ± 0.576
0.0MetVal: 0.0 ± 0.0
1.813MetTrp: 1.813 ± 0.892
1.208MetTyr: 1.208 ± 0.807
0.0MetXaa: 0.0 ± 0.0
Asn
3.625AsnAla: 3.625 ± 0.92
2.417AsnCys: 2.417 ± 1.209
3.021AsnAsp: 3.021 ± 0.947
1.813AsnGlu: 1.813 ± 0.621
0.604AsnPhe: 0.604 ± 0.576
1.813AsnGly: 1.813 ± 1.231
3.021AsnHis: 3.021 ± 1.749
4.23AsnIle: 4.23 ± 0.867
3.021AsnLys: 3.021 ± 1.213
2.417AsnLeu: 2.417 ± 1.138
3.021AsnMet: 3.021 ± 1.217
3.021AsnAsn: 3.021 ± 1.591
2.417AsnPro: 2.417 ± 0.763
1.208AsnGln: 1.208 ± 1.069
1.208AsnArg: 1.208 ± 0.723
4.834AsnSer: 4.834 ± 1.676
3.021AsnThr: 3.021 ± 0.58
6.042AsnVal: 6.042 ± 1.815
0.0AsnTrp: 0.0 ± 0.0
5.438AsnTyr: 5.438 ± 0.962
0.0AsnXaa: 0.0 ± 0.0
Pro
2.417ProAla: 2.417 ± 1.37
1.208ProCys: 1.208 ± 0.94
3.625ProAsp: 3.625 ± 1.062
1.813ProGlu: 1.813 ± 0.637
1.208ProPhe: 1.208 ± 0.673
4.834ProGly: 4.834 ± 1.461
1.813ProHis: 1.813 ± 1.427
3.625ProIle: 3.625 ± 2.632
3.021ProLys: 3.021 ± 0.947
7.855ProLeu: 7.855 ± 2.129
1.813ProMet: 1.813 ± 1.144
1.813ProAsn: 1.813 ± 0.745
1.813ProPro: 1.813 ± 0.745
1.208ProGln: 1.208 ± 0.828
4.23ProArg: 4.23 ± 1.109
7.855ProSer: 7.855 ± 2.117
3.625ProThr: 3.625 ± 1.449
1.208ProVal: 1.208 ± 0.566
0.604ProTrp: 0.604 ± 0.535
3.625ProTyr: 3.625 ± 1.557
0.0ProXaa: 0.0 ± 0.0
Gln
3.625GlnAla: 3.625 ± 1.243
0.0GlnCys: 0.0 ± 0.0
1.813GlnAsp: 1.813 ± 0.893
2.417GlnGlu: 2.417 ± 0.974
2.417GlnPhe: 2.417 ± 0.906
2.417GlnGly: 2.417 ± 0.906
3.021GlnHis: 3.021 ± 1.45
2.417GlnIle: 2.417 ± 1.545
1.208GlnLys: 1.208 ± 0.666
2.417GlnLeu: 2.417 ± 1.352
1.813GlnMet: 1.813 ± 0.996
0.0GlnAsn: 0.0 ± 0.0
3.021GlnPro: 3.021 ± 1.067
0.0GlnGln: 0.0 ± 0.0
1.813GlnArg: 1.813 ± 0.788
2.417GlnSer: 2.417 ± 0.879
0.604GlnThr: 0.604 ± 0.476
3.021GlnVal: 3.021 ± 1.103
0.0GlnTrp: 0.0 ± 0.0
2.417GlnTyr: 2.417 ± 1.136
0.0GlnXaa: 0.0 ± 0.0
Arg
1.208ArgAla: 1.208 ± 0.697
1.813ArgCys: 1.813 ± 0.875
3.625ArgAsp: 3.625 ± 0.848
3.021ArgGlu: 3.021 ± 0.923
3.021ArgPhe: 3.021 ± 0.687
3.625ArgGly: 3.625 ± 1.306
3.021ArgHis: 3.021 ± 1.305
3.021ArgIle: 3.021 ± 1.098
3.021ArgLys: 3.021 ± 1.612
5.438ArgLeu: 5.438 ± 0.999
0.604ArgMet: 0.604 ± 0.535
3.625ArgAsn: 3.625 ± 1.236
4.23ArgPro: 4.23 ± 1.27
0.604ArgGln: 0.604 ± 0.64
6.042ArgArg: 6.042 ± 2.809
4.23ArgSer: 4.23 ± 1.48
3.625ArgThr: 3.625 ± 1.521
3.625ArgVal: 3.625 ± 1.383
1.208ArgTrp: 1.208 ± 0.723
3.021ArgTyr: 3.021 ± 1.339
0.0ArgXaa: 0.0 ± 0.0
Ser
5.438SerAla: 5.438 ± 1.512
1.813SerCys: 1.813 ± 0.745
2.417SerAsp: 2.417 ± 0.879
0.604SerGlu: 0.604 ± 0.476
3.625SerPhe: 3.625 ± 0.88
3.625SerGly: 3.625 ± 1.185
3.625SerHis: 3.625 ± 0.975
6.042SerIle: 6.042 ± 1.33
7.855SerLys: 7.855 ± 2.008
6.647SerLeu: 6.647 ± 1.597
3.021SerMet: 3.021 ± 1.42
8.459SerAsn: 8.459 ± 1.118
3.021SerPro: 3.021 ± 1.314
2.417SerGln: 2.417 ± 1.108
4.23SerArg: 4.23 ± 1.969
9.668SerSer: 9.668 ± 3.231
6.647SerThr: 6.647 ± 1.795
3.021SerVal: 3.021 ± 1.009
0.604SerTrp: 0.604 ± 0.476
5.438SerTyr: 5.438 ± 1.433
0.0SerXaa: 0.0 ± 0.0
Thr
4.23ThrAla: 4.23 ± 1.874
0.604ThrCys: 0.604 ± 0.739
2.417ThrAsp: 2.417 ± 0.805
3.021ThrGlu: 3.021 ± 1.592
3.625ThrPhe: 3.625 ± 1.134
2.417ThrGly: 2.417 ± 1.118
3.625ThrHis: 3.625 ± 1.365
3.625ThrIle: 3.625 ± 1.543
3.625ThrLys: 3.625 ± 1.395
3.625ThrLeu: 3.625 ± 0.9
1.208ThrMet: 1.208 ± 0.733
3.021ThrAsn: 3.021 ± 1.257
5.438ThrPro: 5.438 ± 1.742
1.813ThrGln: 1.813 ± 0.897
2.417ThrArg: 2.417 ± 1.012
1.813ThrSer: 1.813 ± 0.936
2.417ThrThr: 2.417 ± 1.205
3.625ThrVal: 3.625 ± 1.643
1.813ThrTrp: 1.813 ± 1.379
0.604ThrTyr: 0.604 ± 0.476
0.0ThrXaa: 0.0 ± 0.0
Val
0.604ValAla: 0.604 ± 0.574
1.208ValCys: 1.208 ± 0.697
4.834ValAsp: 4.834 ± 1.829
6.042ValGlu: 6.042 ± 1.994
1.208ValPhe: 1.208 ± 0.807
1.813ValGly: 1.813 ± 1.144
0.0ValHis: 0.0 ± 0.0
5.438ValIle: 5.438 ± 1.098
2.417ValLys: 2.417 ± 1.132
4.834ValLeu: 4.834 ± 1.844
0.604ValMet: 0.604 ± 0.546
4.834ValAsn: 4.834 ± 1.039
3.625ValPro: 3.625 ± 1.039
3.625ValGln: 3.625 ± 1.166
3.021ValArg: 3.021 ± 1.575
4.834ValSer: 4.834 ± 0.834
3.625ValThr: 3.625 ± 2.149
1.813ValVal: 1.813 ± 1.103
0.0ValTrp: 0.0 ± 0.0
2.417ValTyr: 2.417 ± 1.264
0.0ValXaa: 0.0 ± 0.0
Trp
2.417TrpAla: 2.417 ± 1.434
0.0TrpCys: 0.0 ± 0.0
1.208TrpAsp: 1.208 ± 0.908
1.208TrpGlu: 1.208 ± 0.772
0.604TrpPhe: 0.604 ± 0.641
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.604TrpMet: 0.604 ± 0.546
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
1.208TrpGln: 1.208 ± 0.619
1.208TrpArg: 1.208 ± 0.757
0.604TrpSer: 0.604 ± 0.535
1.813TrpThr: 1.813 ± 0.923
0.604TrpVal: 0.604 ± 0.546
0.0TrpTrp: 0.0 ± 0.0
0.604TrpTyr: 0.604 ± 0.476
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.021TyrAla: 3.021 ± 1.248
0.0TyrCys: 0.0 ± 0.0
2.417TyrAsp: 2.417 ± 1.641
1.813TyrGlu: 1.813 ± 0.841
2.417TyrPhe: 2.417 ± 0.51
1.813TyrGly: 1.813 ± 0.802
1.208TyrHis: 1.208 ± 0.76
3.021TyrIle: 3.021 ± 1.139
2.417TyrLys: 2.417 ± 0.74
6.042TyrLeu: 6.042 ± 1.818
2.417TyrMet: 2.417 ± 0.848
1.208TyrAsn: 1.208 ± 0.566
3.625TyrPro: 3.625 ± 1.377
0.604TyrGln: 0.604 ± 0.546
4.834TyrArg: 4.834 ± 1.745
2.417TyrSer: 2.417 ± 0.906
1.813TyrThr: 1.813 ± 1.092
3.021TyrVal: 3.021 ± 0.588
0.0TyrTrp: 0.0 ± 0.0
1.208TyrTyr: 1.208 ± 0.757
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 8 proteins (1656 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski