Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_450

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.792AlaAla: 7.792 ± 3.454
0.649AlaCys: 0.649 ± 0.785
2.597AlaAsp: 2.597 ± 1.817
6.494AlaGlu: 6.494 ± 2.152
2.597AlaPhe: 2.597 ± 0.665
3.247AlaGly: 3.247 ± 1.188
0.649AlaHis: 0.649 ± 0.454
3.896AlaIle: 3.896 ± 1.511
11.688AlaLys: 11.688 ± 3.303
4.545AlaLeu: 4.545 ± 2.126
1.299AlaMet: 1.299 ± 1.465
5.844AlaAsn: 5.844 ± 3.957
3.247AlaPro: 3.247 ± 1.71
7.792AlaGln: 7.792 ± 2.796
1.948AlaArg: 1.948 ± 0.842
3.247AlaSer: 3.247 ± 2.751
2.597AlaThr: 2.597 ± 2.029
3.896AlaVal: 3.896 ± 1.207
1.299AlaTrp: 1.299 ± 0.908
3.247AlaTyr: 3.247 ± 0.868
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.299CysGly: 1.299 ± 0.91
0.0CysHis: 0.0 ± 0.0
1.299CysIle: 1.299 ± 0.771
0.649CysLys: 0.649 ± 0.785
3.247CysLeu: 3.247 ± 1.021
0.649CysMet: 0.649 ± 0.454
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.299CysArg: 1.299 ± 0.55
0.649CysSer: 0.649 ± 0.555
0.649CysThr: 0.649 ± 0.555
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.649CysTyr: 0.649 ± 0.555
0.0CysXaa: 0.0 ± 0.0
Asp
2.597AspAla: 2.597 ± 1.817
0.0AspCys: 0.0 ± 0.0
3.247AspAsp: 3.247 ± 1.715
6.494AspGlu: 6.494 ± 1.706
2.597AspPhe: 2.597 ± 0.884
1.299AspGly: 1.299 ± 1.11
2.597AspHis: 2.597 ± 0.88
2.597AspIle: 2.597 ± 1.094
3.247AspLys: 3.247 ± 1.525
4.545AspLeu: 4.545 ± 1.472
2.597AspMet: 2.597 ± 1.683
1.948AspAsn: 1.948 ± 0.713
1.299AspPro: 1.299 ± 0.908
1.299AspGln: 1.299 ± 0.812
1.299AspArg: 1.299 ± 0.812
1.299AspSer: 1.299 ± 0.55
1.299AspThr: 1.299 ± 0.908
1.299AspVal: 1.299 ± 1.092
0.649AspTrp: 0.649 ± 0.454
2.597AspTyr: 2.597 ± 1.817
0.0AspXaa: 0.0 ± 0.0
Glu
7.792GluAla: 7.792 ± 3.955
0.649GluCys: 0.649 ± 0.66
1.948GluAsp: 1.948 ± 1.022
7.792GluGlu: 7.792 ± 3.736
6.494GluPhe: 6.494 ± 2.086
2.597GluGly: 2.597 ± 0.914
5.195GluHis: 5.195 ± 2.049
7.143GluIle: 7.143 ± 2.474
5.195GluLys: 5.195 ± 2.146
6.494GluLeu: 6.494 ± 1.878
2.597GluMet: 2.597 ± 1.374
5.844GluAsn: 5.844 ± 1.437
1.948GluPro: 1.948 ± 2.522
2.597GluGln: 2.597 ± 1.236
3.247GluArg: 3.247 ± 1.576
3.896GluSer: 3.896 ± 1.6
4.545GluThr: 4.545 ± 1.591
3.896GluVal: 3.896 ± 2.268
1.948GluTrp: 1.948 ± 0.585
7.143GluTyr: 7.143 ± 1.751
0.0GluXaa: 0.0 ± 0.0
Phe
1.948PheAla: 1.948 ± 1.363
0.0PheCys: 0.0 ± 0.0
2.597PheAsp: 2.597 ± 0.987
1.948PheGlu: 1.948 ± 1.056
1.299PhePhe: 1.299 ± 0.882
1.948PheGly: 1.948 ± 0.842
0.0PheHis: 0.0 ± 0.0
1.299PheIle: 1.299 ± 0.908
3.247PheLys: 3.247 ± 2.796
1.948PheLeu: 1.948 ± 1.271
1.299PheMet: 1.299 ± 0.55
3.247PheAsn: 3.247 ± 1.909
0.649PhePro: 0.649 ± 0.555
0.0PheGln: 0.0 ± 0.0
0.649PheArg: 0.649 ± 0.454
2.597PheSer: 2.597 ± 1.102
1.299PheThr: 1.299 ± 0.908
1.299PheVal: 1.299 ± 0.774
1.299PheTrp: 1.299 ± 0.55
1.948PheTyr: 1.948 ± 1.363
0.0PheXaa: 0.0 ± 0.0
Gly
5.195GlyAla: 5.195 ± 2.62
1.299GlyCys: 1.299 ± 1.11
1.948GlyAsp: 1.948 ± 1.013
4.545GlyGlu: 4.545 ± 1.504
0.0GlyPhe: 0.0 ± 0.0
4.545GlyGly: 4.545 ± 1.44
1.948GlyHis: 1.948 ± 1.013
9.74GlyIle: 9.74 ± 3.052
5.844GlyLys: 5.844 ± 3.071
2.597GlyLeu: 2.597 ± 1.214
1.299GlyMet: 1.299 ± 0.812
3.896GlyAsn: 3.896 ± 1.271
1.299GlyPro: 1.299 ± 0.908
3.247GlyGln: 3.247 ± 1.909
1.948GlyArg: 1.948 ± 1.152
1.299GlySer: 1.299 ± 1.682
6.494GlyThr: 6.494 ± 1.955
2.597GlyVal: 2.597 ± 0.665
1.299GlyTrp: 1.299 ± 0.661
5.844GlyTyr: 5.844 ± 2.457
0.0GlyXaa: 0.0 ± 0.0
His
1.299HisAla: 1.299 ± 0.55
0.0HisCys: 0.0 ± 0.0
1.299HisAsp: 1.299 ± 0.908
0.0HisGlu: 0.0 ± 0.0
1.948HisPhe: 1.948 ± 1.054
1.948HisGly: 1.948 ± 1.013
0.649HisHis: 0.649 ± 0.454
0.649HisIle: 0.649 ± 0.841
1.948HisLys: 1.948 ± 0.788
0.649HisLeu: 0.649 ± 0.555
2.597HisMet: 2.597 ± 0.889
0.649HisAsn: 0.649 ± 0.817
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.649HisArg: 0.649 ± 0.454
0.649HisSer: 0.649 ± 0.841
0.649HisThr: 0.649 ± 0.454
0.649HisVal: 0.649 ± 0.454
1.299HisTrp: 1.299 ± 0.908
1.948HisTyr: 1.948 ± 1.007
0.0HisXaa: 0.0 ± 0.0
Ile
5.195IleAla: 5.195 ± 1.209
0.0IleCys: 0.0 ± 0.0
3.896IleAsp: 3.896 ± 1.523
4.545IleGlu: 4.545 ± 1.928
0.649IlePhe: 0.649 ± 0.454
8.442IleGly: 8.442 ± 2.422
0.0IleHis: 0.0 ± 0.0
1.299IleIle: 1.299 ± 0.91
9.74IleLys: 9.74 ± 2.674
3.896IleLeu: 3.896 ± 1.68
0.649IleMet: 0.649 ± 0.782
8.442IleAsn: 8.442 ± 2.124
5.195IlePro: 5.195 ± 1.86
1.299IleGln: 1.299 ± 0.812
5.195IleArg: 5.195 ± 1.796
4.545IleSer: 4.545 ± 1.706
4.545IleThr: 4.545 ± 1.928
0.649IleVal: 0.649 ± 0.454
1.299IleTrp: 1.299 ± 0.809
6.494IleTyr: 6.494 ± 2.004
0.0IleXaa: 0.0 ± 0.0
Lys
2.597LysAla: 2.597 ± 0.93
0.649LysCys: 0.649 ± 0.66
3.247LysAsp: 3.247 ± 1.498
7.792LysGlu: 7.792 ± 2.906
1.299LysPhe: 1.299 ± 0.812
7.792LysGly: 7.792 ± 2.168
0.0LysHis: 0.0 ± 0.0
8.442LysIle: 8.442 ± 2.733
11.688LysLys: 11.688 ± 3.135
3.896LysLeu: 3.896 ± 2.193
0.649LysMet: 0.649 ± 0.733
9.74LysAsn: 9.74 ± 3.676
4.545LysPro: 4.545 ± 1.538
3.247LysGln: 3.247 ± 1.616
4.545LysArg: 4.545 ± 2.315
4.545LysSer: 4.545 ± 2.252
4.545LysThr: 4.545 ± 1.775
1.948LysVal: 1.948 ± 1.117
0.649LysTrp: 0.649 ± 0.454
2.597LysTyr: 2.597 ± 2.064
0.0LysXaa: 0.0 ± 0.0
Leu
4.545LeuAla: 4.545 ± 2.537
0.649LeuCys: 0.649 ± 0.555
5.195LeuAsp: 5.195 ± 1.223
11.039LeuGlu: 11.039 ± 4.333
3.247LeuPhe: 3.247 ± 1.794
5.195LeuGly: 5.195 ± 2.428
0.0LeuHis: 0.0 ± 0.0
5.844LeuIle: 5.844 ± 2.267
3.247LeuLys: 3.247 ± 1.719
3.247LeuLeu: 3.247 ± 1.208
1.299LeuMet: 1.299 ± 0.812
1.948LeuAsn: 1.948 ± 0.932
5.844LeuPro: 5.844 ± 1.784
3.896LeuGln: 3.896 ± 1.395
2.597LeuArg: 2.597 ± 1.1
3.247LeuSer: 3.247 ± 1.445
3.896LeuThr: 3.896 ± 1.296
0.0LeuVal: 0.0 ± 0.0
1.299LeuTrp: 1.299 ± 0.774
0.649LeuTyr: 0.649 ± 0.454
0.0LeuXaa: 0.0 ± 0.0
Met
3.247MetAla: 3.247 ± 2.751
0.649MetCys: 0.649 ± 0.454
0.649MetAsp: 0.649 ± 0.454
2.597MetGlu: 2.597 ± 1.79
0.0MetPhe: 0.0 ± 0.0
2.597MetGly: 2.597 ± 1.207
0.0MetHis: 0.0 ± 0.0
2.597MetIle: 2.597 ± 0.987
1.948MetLys: 1.948 ± 1.283
1.299MetLeu: 1.299 ± 1.106
0.0MetMet: 0.0 ± 0.0
1.948MetAsn: 1.948 ± 1.141
1.299MetPro: 1.299 ± 0.55
0.649MetGln: 0.649 ± 0.454
0.0MetArg: 0.0 ± 0.0
1.299MetSer: 1.299 ± 0.661
2.597MetThr: 2.597 ± 0.987
0.649MetVal: 0.649 ± 0.841
0.649MetTrp: 0.649 ± 0.454
1.299MetTyr: 1.299 ± 0.771
0.0MetXaa: 0.0 ± 0.0
Asn
3.896AsnAla: 3.896 ± 3.477
0.0AsnCys: 0.0 ± 0.0
1.948AsnAsp: 1.948 ± 1.187
3.896AsnGlu: 3.896 ± 1.458
0.649AsnPhe: 0.649 ± 0.555
3.247AsnGly: 3.247 ± 0.949
0.0AsnHis: 0.0 ± 0.0
3.896AsnIle: 3.896 ± 1.457
5.195AsnLys: 5.195 ± 1.966
3.896AsnLeu: 3.896 ± 1.217
2.597AsnMet: 2.597 ± 1.192
3.896AsnAsn: 3.896 ± 1.654
1.299AsnPro: 1.299 ± 0.809
2.597AsnGln: 2.597 ± 1.321
5.195AsnArg: 5.195 ± 2.564
6.494AsnSer: 6.494 ± 4.867
4.545AsnThr: 4.545 ± 1.122
1.948AsnVal: 1.948 ± 1.319
1.299AsnTrp: 1.299 ± 0.866
3.247AsnTyr: 3.247 ± 0.844
0.0AsnXaa: 0.0 ± 0.0
Pro
1.299ProAla: 1.299 ± 0.938
1.299ProCys: 1.299 ± 0.55
0.649ProAsp: 0.649 ± 0.454
5.844ProGlu: 5.844 ± 2.63
1.948ProPhe: 1.948 ± 1.363
3.247ProGly: 3.247 ± 1.067
1.948ProHis: 1.948 ± 0.842
3.247ProIle: 3.247 ± 0.978
2.597ProLys: 2.597 ± 0.987
1.948ProLeu: 1.948 ± 1.007
1.299ProMet: 1.299 ± 0.774
1.299ProAsn: 1.299 ± 0.908
0.649ProPro: 0.649 ± 0.555
2.597ProGln: 2.597 ± 1.817
0.0ProArg: 0.0 ± 0.0
1.299ProSer: 1.299 ± 0.908
1.948ProThr: 1.948 ± 1.363
1.948ProVal: 1.948 ± 1.363
1.299ProTrp: 1.299 ± 1.113
1.299ProTyr: 1.299 ± 0.75
0.0ProXaa: 0.0 ± 0.0
Gln
7.143GlnAla: 7.143 ± 2.281
0.0GlnCys: 0.0 ± 0.0
1.948GlnAsp: 1.948 ± 1.007
1.299GlnGlu: 1.299 ± 0.812
1.299GlnPhe: 1.299 ± 0.661
1.948GlnGly: 1.948 ± 1.363
0.0GlnHis: 0.0 ± 0.0
2.597GlnIle: 2.597 ± 1.207
1.299GlnLys: 1.299 ± 0.75
5.844GlnLeu: 5.844 ± 1.755
0.649GlnMet: 0.649 ± 0.733
1.948GlnAsn: 1.948 ± 1.579
0.0GlnPro: 0.0 ± 0.0
4.545GlnGln: 4.545 ± 1.44
1.948GlnArg: 1.948 ± 0.865
2.597GlnSer: 2.597 ± 1.079
2.597GlnThr: 2.597 ± 2.029
1.948GlnVal: 1.948 ± 1.363
0.649GlnTrp: 0.649 ± 0.555
1.299GlnTyr: 1.299 ± 0.812
0.0GlnXaa: 0.0 ± 0.0
Arg
3.896ArgAla: 3.896 ± 1.562
0.649ArgCys: 0.649 ± 0.454
1.299ArgAsp: 1.299 ± 0.91
5.844ArgGlu: 5.844 ± 1.968
1.299ArgPhe: 1.299 ± 0.812
1.299ArgGly: 1.299 ± 0.882
1.299ArgHis: 1.299 ± 0.91
5.195ArgIle: 5.195 ± 1.609
1.948ArgLys: 1.948 ± 1.007
3.247ArgLeu: 3.247 ± 1.525
1.299ArgMet: 1.299 ± 0.908
1.948ArgAsn: 1.948 ± 0.585
1.948ArgPro: 1.948 ± 0.842
1.299ArgGln: 1.299 ± 0.908
1.299ArgArg: 1.299 ± 1.11
3.896ArgSer: 3.896 ± 1.576
2.597ArgThr: 2.597 ± 1.116
0.0ArgVal: 0.0 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
3.247ArgTyr: 3.247 ± 1.687
0.0ArgXaa: 0.0 ± 0.0
Ser
5.844SerAla: 5.844 ± 3.388
0.649SerCys: 0.649 ± 0.454
1.299SerAsp: 1.299 ± 0.661
6.494SerGlu: 6.494 ± 1.451
0.0SerPhe: 0.0 ± 0.0
4.545SerGly: 4.545 ± 3.352
0.649SerHis: 0.649 ± 0.454
2.597SerIle: 2.597 ± 1.618
1.948SerLys: 1.948 ± 0.806
5.844SerLeu: 5.844 ± 1.352
0.649SerMet: 0.649 ± 0.454
1.299SerAsn: 1.299 ± 0.55
3.247SerPro: 3.247 ± 1.174
2.597SerGln: 2.597 ± 2.137
4.545SerArg: 4.545 ± 0.968
6.494SerSer: 6.494 ± 1.682
4.545SerThr: 4.545 ± 1.426
3.247SerVal: 3.247 ± 1.089
1.299SerTrp: 1.299 ± 0.809
1.948SerTyr: 1.948 ± 1.207
0.0SerXaa: 0.0 ± 0.0
Thr
5.844ThrAla: 5.844 ± 3.221
1.299ThrCys: 1.299 ± 0.91
3.247ThrAsp: 3.247 ± 1.03
3.247ThrGlu: 3.247 ± 1.158
0.649ThrPhe: 0.649 ± 0.454
6.494ThrGly: 6.494 ± 2.236
2.597ThrHis: 2.597 ± 1.236
5.195ThrIle: 5.195 ± 1.855
5.844ThrLys: 5.844 ± 2.269
5.195ThrLeu: 5.195 ± 1.207
1.299ThrMet: 1.299 ± 0.774
0.649ThrAsn: 0.649 ± 0.454
0.649ThrPro: 0.649 ± 0.454
1.948ThrGln: 1.948 ± 0.865
1.948ThrArg: 1.948 ± 1.013
4.545ThrSer: 4.545 ± 1.44
5.195ThrThr: 5.195 ± 1.631
2.597ThrVal: 2.597 ± 1.533
0.0ThrTrp: 0.0 ± 0.0
1.948ThrTyr: 1.948 ± 0.585
0.0ThrXaa: 0.0 ± 0.0
Val
2.597ValAla: 2.597 ± 0.693
1.299ValCys: 1.299 ± 0.91
3.247ValAsp: 3.247 ± 2.271
4.545ValGlu: 4.545 ± 1.968
0.649ValPhe: 0.649 ± 0.733
1.299ValGly: 1.299 ± 0.55
0.0ValHis: 0.0 ± 0.0
3.247ValIle: 3.247 ± 1.208
0.649ValLys: 0.649 ± 0.555
1.948ValLeu: 1.948 ± 0.865
0.649ValMet: 0.649 ± 0.454
2.597ValAsn: 2.597 ± 0.876
3.247ValPro: 3.247 ± 1.739
0.0ValGln: 0.0 ± 0.0
0.649ValArg: 0.649 ± 0.555
1.948ValSer: 1.948 ± 0.585
1.299ValThr: 1.299 ± 0.908
0.0ValVal: 0.0 ± 0.0
0.0ValTrp: 0.0 ± 0.0
1.948ValTyr: 1.948 ± 0.788
0.0ValXaa: 0.0 ± 0.0
Trp
1.299TrpAla: 1.299 ± 0.55
0.0TrpCys: 0.0 ± 0.0
1.299TrpAsp: 1.299 ± 1.11
0.649TrpGlu: 0.649 ± 0.454
1.299TrpPhe: 1.299 ± 0.908
1.948TrpGly: 1.948 ± 0.713
0.649TrpHis: 0.649 ± 0.454
0.649TrpIle: 0.649 ± 0.454
3.247TrpLys: 3.247 ± 1.337
0.0TrpLeu: 0.0 ± 0.0
0.649TrpMet: 0.649 ± 0.841
0.649TrpAsn: 0.649 ± 0.733
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.948TrpArg: 1.948 ± 1.232
2.597TrpSer: 2.597 ± 1.116
0.649TrpThr: 0.649 ± 0.454
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.649TrpTyr: 0.649 ± 0.555
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.545TyrAla: 4.545 ± 1.713
0.649TyrCys: 0.649 ± 0.555
3.247TyrAsp: 3.247 ± 2.071
4.545TyrGlu: 4.545 ± 1.713
2.597TyrPhe: 2.597 ± 0.884
1.948TyrGly: 1.948 ± 1.152
1.299TyrHis: 1.299 ± 1.11
4.545TyrIle: 4.545 ± 1.337
3.247TyrLys: 3.247 ± 1.381
2.597TyrLeu: 2.597 ± 0.876
1.299TyrMet: 1.299 ± 0.661
1.948TyrAsn: 1.948 ± 1.44
1.299TyrPro: 1.299 ± 0.55
1.948TyrGln: 1.948 ± 0.865
2.597TyrArg: 2.597 ± 1.527
2.597TyrSer: 2.597 ± 1.1
3.896TyrThr: 3.896 ± 1.07
3.247TyrVal: 3.247 ± 1.662
1.948TyrTrp: 1.948 ± 0.713
4.545TyrTyr: 4.545 ± 2.164
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1541 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski