Armillaria gallica (Bulbous honey fungus) (Armillaria bulbosa)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Physalacriaceae; Armillaria

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 25522 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2H3ERP8|A0A2H3ERP8_ARMGA Uncharacterized protein OS=Armillaria gallica OX=47427 GN=ARMGADRAFT_1094090 PE=4 SV=1
MM1 pKa = 7.27VFRR4 pKa = 11.84TFAVFSLFSWAAAVANPLASGDD26 pKa = 3.45FWTSIEE32 pKa = 4.33DD33 pKa = 3.52LRR35 pKa = 11.84GPADD39 pKa = 3.63SIYY42 pKa = 10.52RR43 pKa = 11.84DD44 pKa = 3.47STLLRR49 pKa = 11.84IQPTAASANTLLNDD63 pKa = 3.15VTAFNSEE70 pKa = 3.83VQAALTQIPATVMSEE85 pKa = 3.69EE86 pKa = 4.9DD87 pKa = 3.13ADD89 pKa = 3.78STYY92 pKa = 10.14RR93 pKa = 11.84TFLDD97 pKa = 3.16IYY99 pKa = 9.89EE100 pKa = 4.36DD101 pKa = 3.46TRR103 pKa = 11.84SAFNALNEE111 pKa = 4.25AEE113 pKa = 4.86SYY115 pKa = 10.96LEE117 pKa = 3.95PFGLVPTICGLTQSIQTGLHH137 pKa = 4.95TLVNEE142 pKa = 4.44TLAVTPEE149 pKa = 4.66DD150 pKa = 3.98YY151 pKa = 10.98VSPIQTVTGPILDD164 pKa = 4.48AVDD167 pKa = 3.58SAINFYY173 pKa = 10.95CC174 pKa = 4.91

Molecular weight: 18.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2H3CJU4|A0A2H3CJU4_ARMGA Uncharacterized protein OS=Armillaria gallica OX=47427 GN=ARMGADRAFT_1037963 PE=4 SV=1
MM1 pKa = 7.84LPRR4 pKa = 11.84CQWRR8 pKa = 11.84FRR10 pKa = 11.84LVSSTPLRR18 pKa = 11.84TSGGLTFTSKK28 pKa = 10.9AFRR31 pKa = 11.84KK32 pKa = 9.53SLQACSPMSDD42 pKa = 3.0CRR44 pKa = 11.84FSINATKK51 pKa = 8.63YY52 pKa = 7.74TKK54 pKa = 9.17HH55 pKa = 5.73TLLVYY60 pKa = 9.78TSHH63 pKa = 6.97IQDD66 pKa = 3.69PQVSTKK72 pKa = 8.45SRR74 pKa = 11.84RR75 pKa = 11.84ISTRR79 pKa = 11.84CHH81 pKa = 5.75HH82 pKa = 6.98ASTTTVLSTFSSCSLAVFRR101 pKa = 11.84SFLSSVVFTPPALSSHH117 pKa = 6.35TKK119 pKa = 10.02NAMGQIEE126 pKa = 5.12AYY128 pKa = 9.53LAKK131 pKa = 10.24DD132 pKa = 4.27LKK134 pKa = 10.82RR135 pKa = 11.84EE136 pKa = 4.13PYY138 pKa = 10.06DD139 pKa = 3.43VRR141 pKa = 11.84SSDD144 pKa = 3.21ISLTRR149 pKa = 11.84HH150 pKa = 5.32RR151 pKa = 4.89

Molecular weight: 17.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

25522

0

25522

8654150

49

4990

339.1

37.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.648 ± 0.013

1.59 ± 0.008

5.657 ± 0.012

5.611 ± 0.016

3.953 ± 0.01

6.12 ± 0.014

2.692 ± 0.008

5.397 ± 0.012

4.491 ± 0.013

9.545 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.28 ± 0.006

3.542 ± 0.008

6.077 ± 0.019

3.599 ± 0.009

5.959 ± 0.013

8.763 ± 0.02

6.103 ± 0.012

6.477 ± 0.012

1.587 ± 0.007

2.909 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski