Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_106

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.615AlaAla: 0.615 ± 0.551
0.615AlaCys: 0.615 ± 0.551
6.154AlaAsp: 6.154 ± 1.429
3.077AlaGlu: 3.077 ± 1.631
3.077AlaPhe: 3.077 ± 1.421
1.846AlaGly: 1.846 ± 0.95
0.615AlaHis: 0.615 ± 0.535
2.462AlaIle: 2.462 ± 1.208
2.462AlaLys: 2.462 ± 1.164
3.692AlaLeu: 3.692 ± 0.858
1.846AlaMet: 1.846 ± 1.04
1.846AlaAsn: 1.846 ± 0.899
3.692AlaPro: 3.692 ± 1.373
2.462AlaGln: 2.462 ± 0.789
2.462AlaArg: 2.462 ± 1.172
6.769AlaSer: 6.769 ± 0.967
3.077AlaThr: 3.077 ± 1.305
1.231AlaVal: 1.231 ± 1.07
0.615AlaTrp: 0.615 ± 0.415
4.308AlaTyr: 4.308 ± 1.144
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.615CysCys: 0.615 ± 0.743
1.846CysAsp: 1.846 ± 0.661
0.615CysGlu: 0.615 ± 0.551
0.615CysPhe: 0.615 ± 0.415
3.077CysGly: 3.077 ± 0.896
0.0CysHis: 0.0 ± 0.0
0.615CysIle: 0.615 ± 0.768
0.615CysLys: 0.615 ± 0.535
1.231CysLeu: 1.231 ± 1.537
1.231CysMet: 1.231 ± 0.51
0.615CysAsn: 0.615 ± 0.768
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.615CysArg: 0.615 ± 0.551
2.462CysSer: 2.462 ± 1.172
0.615CysThr: 0.615 ± 0.551
1.846CysVal: 1.846 ± 1.565
0.0CysTrp: 0.0 ± 0.0
1.231CysTyr: 1.231 ± 0.806
0.0CysXaa: 0.0 ± 0.0
Asp
1.231AspAla: 1.231 ± 0.5
0.615AspCys: 0.615 ± 0.768
6.769AspAsp: 6.769 ± 2.304
3.692AspGlu: 3.692 ± 0.858
4.308AspPhe: 4.308 ± 1.605
3.077AspGly: 3.077 ± 0.966
0.615AspHis: 0.615 ± 0.415
5.538AspIle: 5.538 ± 1.057
4.308AspLys: 4.308 ± 1.385
5.538AspLeu: 5.538 ± 1.181
0.615AspMet: 0.615 ± 0.768
3.077AspAsn: 3.077 ± 1.294
0.0AspPro: 0.0 ± 0.0
1.231AspGln: 1.231 ± 0.5
3.077AspArg: 3.077 ± 1.003
13.538AspSer: 13.538 ± 3.815
3.077AspThr: 3.077 ± 1.29
4.308AspVal: 4.308 ± 1.52
0.615AspTrp: 0.615 ± 0.551
8.615AspTyr: 8.615 ± 1.395
0.0AspXaa: 0.0 ± 0.0
Glu
1.846GluAla: 1.846 ± 1.19
1.231GluCys: 1.231 ± 0.51
3.692GluAsp: 3.692 ± 0.858
1.846GluGlu: 1.846 ± 1.244
2.462GluPhe: 2.462 ± 1.001
0.0GluGly: 0.0 ± 0.0
0.0GluHis: 0.0 ± 0.0
1.846GluIle: 1.846 ± 0.991
6.769GluLys: 6.769 ± 1.397
4.308GluLeu: 4.308 ± 1.167
1.846GluMet: 1.846 ± 0.775
1.846GluAsn: 1.846 ± 0.749
0.0GluPro: 0.0 ± 0.0
2.462GluGln: 2.462 ± 1.105
1.231GluArg: 1.231 ± 1.102
2.462GluSer: 2.462 ± 1.682
3.692GluThr: 3.692 ± 0.787
3.692GluVal: 3.692 ± 1.472
0.0GluTrp: 0.0 ± 0.0
3.077GluTyr: 3.077 ± 1.817
0.0GluXaa: 0.0 ± 0.0
Phe
3.692PheAla: 3.692 ± 1.21
1.231PheCys: 1.231 ± 1.487
3.077PheAsp: 3.077 ± 1.147
0.615PheGlu: 0.615 ± 0.415
3.692PhePhe: 3.692 ± 1.878
5.538PheGly: 5.538 ± 1.56
0.0PheHis: 0.0 ± 0.0
3.077PheIle: 3.077 ± 1.77
1.231PheLys: 1.231 ± 0.637
2.462PheLeu: 2.462 ± 0.789
1.846PheMet: 1.846 ± 0.764
3.077PheAsn: 3.077 ± 0.72
1.231PhePro: 1.231 ± 0.806
2.462PheGln: 2.462 ± 1.844
3.077PheArg: 3.077 ± 0.827
3.692PheSer: 3.692 ± 1.1
3.692PheThr: 3.692 ± 1.21
1.846PheVal: 1.846 ± 0.749
0.615PheTrp: 0.615 ± 0.415
1.231PheTyr: 1.231 ± 0.806
0.0PheXaa: 0.0 ± 0.0
Gly
1.846GlyAla: 1.846 ± 1.04
1.231GlyCys: 1.231 ± 0.758
3.077GlyAsp: 3.077 ± 0.994
2.462GlyGlu: 2.462 ± 0.498
3.077GlyPhe: 3.077 ± 1.296
4.923GlyGly: 4.923 ± 1.037
2.462GlyHis: 2.462 ± 1.658
7.385GlyIle: 7.385 ± 1.185
3.692GlyLys: 3.692 ± 1.129
8.0GlyLeu: 8.0 ± 2.313
0.0GlyMet: 0.0 ± 0.0
3.692GlyAsn: 3.692 ± 1.21
0.615GlyPro: 0.615 ± 0.415
0.0GlyGln: 0.0 ± 0.0
2.462GlyArg: 2.462 ± 1.201
6.154GlySer: 6.154 ± 1.612
1.846GlyThr: 1.846 ± 0.84
6.154GlyVal: 6.154 ± 1.08
0.615GlyTrp: 0.615 ± 0.768
2.462GlyTyr: 2.462 ± 1.57
0.0GlyXaa: 0.0 ± 0.0
His
0.615HisAla: 0.615 ± 0.535
0.615HisCys: 0.615 ± 0.415
0.615HisAsp: 0.615 ± 0.535
0.615HisGlu: 0.615 ± 0.535
0.0HisPhe: 0.0 ± 0.0
1.231HisGly: 1.231 ± 0.829
0.0HisHis: 0.0 ± 0.0
0.615HisIle: 0.615 ± 0.551
0.615HisLys: 0.615 ± 0.415
1.846HisLeu: 1.846 ± 0.978
0.0HisMet: 0.0 ± 0.0
0.615HisAsn: 0.615 ± 0.768
0.0HisPro: 0.0 ± 0.0
1.846HisGln: 1.846 ± 0.649
0.0HisArg: 0.0 ± 0.0
0.615HisSer: 0.615 ± 0.415
0.0HisThr: 0.0 ± 0.0
0.615HisVal: 0.615 ± 0.551
0.0HisTrp: 0.0 ± 0.0
1.846HisTyr: 1.846 ± 1.162
0.0HisXaa: 0.0 ± 0.0
Ile
4.923IleAla: 4.923 ± 1.685
1.231IleCys: 1.231 ± 0.758
6.769IleAsp: 6.769 ± 3.224
3.077IleGlu: 3.077 ± 1.097
0.615IlePhe: 0.615 ± 0.551
3.692IleGly: 3.692 ± 1.344
0.615IleHis: 0.615 ± 0.656
3.077IleIle: 3.077 ± 0.994
3.077IleLys: 3.077 ± 1.407
1.846IleLeu: 1.846 ± 0.991
0.615IleMet: 0.615 ± 0.419
2.462IleAsn: 2.462 ± 1.02
5.538IlePro: 5.538 ± 1.632
1.846IleGln: 1.846 ± 0.74
2.462IleArg: 2.462 ± 0.639
4.923IleSer: 4.923 ± 1.36
3.692IleThr: 3.692 ± 1.022
3.692IleVal: 3.692 ± 1.381
0.615IleTrp: 0.615 ± 0.415
1.231IleTyr: 1.231 ± 0.5
0.0IleXaa: 0.0 ± 0.0
Lys
3.692LysAla: 3.692 ± 1.029
0.0LysCys: 0.0 ± 0.0
3.692LysAsp: 3.692 ± 0.677
3.077LysGlu: 3.077 ± 1.382
1.231LysPhe: 1.231 ± 0.859
4.923LysGly: 4.923 ± 1.598
0.0LysHis: 0.0 ± 0.0
6.154LysIle: 6.154 ± 1.575
4.923LysLys: 4.923 ± 1.813
3.077LysLeu: 3.077 ± 0.975
1.231LysMet: 1.231 ± 0.5
4.923LysAsn: 4.923 ± 1.68
2.462LysPro: 2.462 ± 0.951
3.077LysGln: 3.077 ± 2.037
4.308LysArg: 4.308 ± 2.87
4.923LysSer: 4.923 ± 1.748
1.846LysThr: 1.846 ± 0.95
2.462LysVal: 2.462 ± 1.255
0.0LysTrp: 0.0 ± 0.0
4.308LysTyr: 4.308 ± 2.547
0.0LysXaa: 0.0 ± 0.0
Leu
6.154LeuAla: 6.154 ± 0.664
1.846LeuCys: 1.846 ± 1.162
6.769LeuAsp: 6.769 ± 1.1
4.308LeuGlu: 4.308 ± 1.867
2.462LeuPhe: 2.462 ± 1.02
6.154LeuGly: 6.154 ± 0.664
0.615LeuHis: 0.615 ± 0.768
3.077LeuIle: 3.077 ± 0.712
6.769LeuLys: 6.769 ± 1.986
5.538LeuLeu: 5.538 ± 1.424
0.0LeuMet: 0.0 ± 0.0
5.538LeuAsn: 5.538 ± 2.259
7.385LeuPro: 7.385 ± 3.294
2.462LeuGln: 2.462 ± 0.789
4.308LeuArg: 4.308 ± 2.646
8.0LeuSer: 8.0 ± 1.68
1.846LeuThr: 1.846 ± 0.394
1.846LeuVal: 1.846 ± 0.649
1.231LeuTrp: 1.231 ± 0.51
5.538LeuTyr: 5.538 ± 1.501
0.0LeuXaa: 0.0 ± 0.0
Met
1.231MetAla: 1.231 ± 0.5
0.0MetCys: 0.0 ± 0.0
1.231MetAsp: 1.231 ± 0.5
0.615MetGlu: 0.615 ± 0.535
0.615MetPhe: 0.615 ± 0.535
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.615MetIle: 0.615 ± 0.415
1.231MetLys: 1.231 ± 0.787
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
1.846MetAsn: 1.846 ± 0.394
1.231MetPro: 1.231 ± 0.51
1.231MetGln: 1.231 ± 1.07
1.231MetArg: 1.231 ± 0.5
4.923MetSer: 4.923 ± 0.862
0.0MetThr: 0.0 ± 0.0
1.231MetVal: 1.231 ± 1.101
0.0MetTrp: 0.0 ± 0.0
0.615MetTyr: 0.615 ± 0.415
0.0MetXaa: 0.0 ± 0.0
Asn
4.308AsnAla: 4.308 ± 1.907
1.231AsnCys: 1.231 ± 0.758
1.846AsnAsp: 1.846 ± 0.747
1.846AsnGlu: 1.846 ± 1.223
0.615AsnPhe: 0.615 ± 0.415
3.077AsnGly: 3.077 ± 0.738
0.615AsnHis: 0.615 ± 0.768
3.077AsnIle: 3.077 ± 1.305
4.923AsnLys: 4.923 ± 0.996
6.154AsnLeu: 6.154 ± 1.958
1.231AsnMet: 1.231 ± 0.5
3.077AsnAsn: 3.077 ± 1.198
1.231AsnPro: 1.231 ± 0.51
2.462AsnGln: 2.462 ± 1.1
3.077AsnArg: 3.077 ± 1.097
3.692AsnSer: 3.692 ± 1.492
3.077AsnThr: 3.077 ± 0.526
4.308AsnVal: 4.308 ± 1.25
1.231AsnTrp: 1.231 ± 0.758
4.308AsnTyr: 4.308 ± 1.293
0.0AsnXaa: 0.0 ± 0.0
Pro
1.231ProAla: 1.231 ± 1.102
0.615ProCys: 0.615 ± 0.551
3.077ProAsp: 3.077 ± 1.481
1.231ProGlu: 1.231 ± 0.817
3.692ProPhe: 3.692 ± 1.498
0.615ProGly: 0.615 ± 0.415
0.615ProHis: 0.615 ± 0.551
3.692ProIle: 3.692 ± 0.875
0.615ProLys: 0.615 ± 0.551
5.538ProLeu: 5.538 ± 1.766
0.0ProMet: 0.0 ± 0.0
0.0ProAsn: 0.0 ± 0.0
2.462ProPro: 2.462 ± 1.17
4.308ProGln: 4.308 ± 1.212
1.846ProArg: 1.846 ± 0.978
4.308ProSer: 4.308 ± 0.796
1.846ProThr: 1.846 ± 1.059
4.308ProVal: 4.308 ± 1.731
0.0ProTrp: 0.0 ± 0.0
2.462ProTyr: 2.462 ± 1.255
0.0ProXaa: 0.0 ± 0.0
Gln
3.077GlnAla: 3.077 ± 2.676
0.615GlnCys: 0.615 ± 0.743
1.231GlnAsp: 1.231 ± 1.102
1.846GlnGlu: 1.846 ± 0.95
2.462GlnPhe: 2.462 ± 0.923
3.077GlnGly: 3.077 ± 0.738
1.231GlnHis: 1.231 ± 0.637
0.0GlnIle: 0.0 ± 0.0
2.462GlnLys: 2.462 ± 1.105
2.462GlnLeu: 2.462 ± 1.164
3.077GlnMet: 3.077 ± 2.855
3.077GlnAsn: 3.077 ± 1.202
1.846GlnPro: 1.846 ± 0.394
3.077GlnGln: 3.077 ± 2.676
3.077GlnArg: 3.077 ± 1.202
4.308GlnSer: 4.308 ± 1.683
0.615GlnThr: 0.615 ± 0.415
3.077GlnVal: 3.077 ± 1.823
0.0GlnTrp: 0.0 ± 0.0
1.846GlnTyr: 1.846 ± 0.855
0.0GlnXaa: 0.0 ± 0.0
Arg
1.231ArgAla: 1.231 ± 0.5
0.0ArgCys: 0.0 ± 0.0
3.077ArgAsp: 3.077 ± 0.526
3.077ArgGlu: 3.077 ± 1.421
1.846ArgPhe: 1.846 ± 1.244
3.692ArgGly: 3.692 ± 1.778
1.846ArgHis: 1.846 ± 1.064
0.615ArgIle: 0.615 ± 0.656
3.692ArgLys: 3.692 ± 1.996
6.154ArgLeu: 6.154 ± 1.984
0.615ArgMet: 0.615 ± 0.415
2.462ArgAsn: 2.462 ± 1.255
2.462ArgPro: 2.462 ± 1.02
1.846ArgGln: 1.846 ± 0.661
1.846ArgArg: 1.846 ± 1.162
4.308ArgSer: 4.308 ± 1.03
1.846ArgThr: 1.846 ± 0.749
3.077ArgVal: 3.077 ± 1.733
0.615ArgTrp: 0.615 ± 0.768
1.846ArgTyr: 1.846 ± 0.92
0.0ArgXaa: 0.0 ± 0.0
Ser
9.846SerAla: 9.846 ± 1.965
3.692SerCys: 3.692 ± 1.321
7.385SerAsp: 7.385 ± 2.187
8.0SerGlu: 8.0 ± 1.844
9.231SerPhe: 9.231 ± 1.135
6.769SerGly: 6.769 ± 2.213
1.846SerHis: 1.846 ± 0.978
6.154SerIle: 6.154 ± 1.787
4.308SerLys: 4.308 ± 2.147
8.615SerLeu: 8.615 ± 1.709
0.615SerMet: 0.615 ± 0.619
5.538SerAsn: 5.538 ± 1.09
3.077SerPro: 3.077 ± 0.738
7.385SerGln: 7.385 ± 1.306
1.846SerArg: 1.846 ± 0.95
15.385SerSer: 15.385 ± 4.883
3.692SerThr: 3.692 ± 1.989
7.385SerVal: 7.385 ± 2.768
1.231SerTrp: 1.231 ± 0.817
3.692SerTyr: 3.692 ± 1.379
0.0SerXaa: 0.0 ± 0.0
Thr
1.231ThrAla: 1.231 ± 0.637
0.0ThrCys: 0.0 ± 0.0
3.692ThrAsp: 3.692 ± 1.129
0.615ThrGlu: 0.615 ± 0.535
1.846ThrPhe: 1.846 ± 1.044
3.077ThrGly: 3.077 ± 1.095
0.0ThrHis: 0.0 ± 0.0
1.231ThrIle: 1.231 ± 0.951
1.846ThrLys: 1.846 ± 0.862
3.692ThrLeu: 3.692 ± 1.955
1.231ThrMet: 1.231 ± 0.804
1.846ThrAsn: 1.846 ± 0.95
1.231ThrPro: 1.231 ± 1.311
1.231ThrGln: 1.231 ± 0.5
2.462ThrArg: 2.462 ± 0.498
6.154ThrSer: 6.154 ± 1.349
1.231ThrThr: 1.231 ± 0.669
3.692ThrVal: 3.692 ± 1.498
1.231ThrTrp: 1.231 ± 0.5
4.308ThrTyr: 4.308 ± 1.3
0.0ThrXaa: 0.0 ± 0.0
Val
3.692ValAla: 3.692 ± 1.16
0.615ValCys: 0.615 ± 0.743
6.154ValAsp: 6.154 ± 3.256
1.846ValGlu: 1.846 ± 0.394
2.462ValPhe: 2.462 ± 0.927
4.308ValGly: 4.308 ± 0.831
0.615ValHis: 0.615 ± 0.415
1.846ValIle: 1.846 ± 1.258
2.462ValLys: 2.462 ± 1.2
6.154ValLeu: 6.154 ± 1.608
1.231ValMet: 1.231 ± 0.51
4.923ValAsn: 4.923 ± 0.869
4.308ValPro: 4.308 ± 1.605
1.846ValGln: 1.846 ± 0.95
3.692ValArg: 3.692 ± 1.129
8.615ValSer: 8.615 ± 1.533
1.231ValThr: 1.231 ± 1.102
2.462ValVal: 2.462 ± 1.201
0.0ValTrp: 0.0 ± 0.0
3.077ValTyr: 3.077 ± 0.83
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.615TrpAsp: 0.615 ± 0.415
0.0TrpGlu: 0.0 ± 0.0
1.231TrpPhe: 1.231 ± 0.758
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.615TrpIle: 0.615 ± 0.551
0.615TrpLys: 0.615 ± 0.415
1.231TrpLeu: 1.231 ± 0.817
0.0TrpMet: 0.0 ± 0.0
1.231TrpAsn: 1.231 ± 0.5
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.615TrpArg: 0.615 ± 0.415
1.231TrpSer: 1.231 ± 0.817
0.615TrpThr: 0.615 ± 0.415
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.615TrpTyr: 0.615 ± 0.768
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.462TyrAla: 2.462 ± 1.658
1.846TyrCys: 1.846 ± 0.394
3.077TyrAsp: 3.077 ± 1.305
1.846TyrGlu: 1.846 ± 1.162
1.846TyrPhe: 1.846 ± 0.749
3.077TyrGly: 3.077 ± 0.994
0.615TyrHis: 0.615 ± 0.551
4.308TyrIle: 4.308 ± 1.03
3.692TyrLys: 3.692 ± 1.698
4.308TyrLeu: 4.308 ± 1.955
0.0TyrMet: 0.0 ± 0.0
3.692TyrAsn: 3.692 ± 1.938
3.692TyrPro: 3.692 ± 0.808
1.846TyrGln: 1.846 ± 0.95
2.462TyrArg: 2.462 ± 1.255
9.231TyrSer: 9.231 ± 0.955
4.308TyrThr: 4.308 ± 1.406
4.308TyrVal: 4.308 ± 1.398
0.0TyrTrp: 0.0 ± 0.0
2.462TyrTyr: 2.462 ± 0.741
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1626 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski