Undibacterium pigrum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Undibacterium

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5704 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A318JBN9|A0A318JBN9_9BURK Amino acid/amide ABC transporter substrate-binding protein (HAAT family) OS=Undibacterium pigrum OX=401470 GN=DFR42_102218 PE=4 SV=1
TT1 pKa = 7.14YY2 pKa = 7.63NTTEE6 pKa = 3.92NGVNLNAQSTANAVARR22 pKa = 11.84VVTDD26 pKa = 4.23TINLGAGNDD35 pKa = 3.74TLVTYY40 pKa = 9.55GAINLAGAQLSNIEE54 pKa = 4.63NITSNSAVVITASQYY69 pKa = 10.69AALIAARR76 pKa = 11.84AALNLSGPVLTFSGVGPHH94 pKa = 6.06QLTIVDD100 pKa = 4.56DD101 pKa = 3.98VAGANNIDD109 pKa = 3.98LSFISITGGTLVYY122 pKa = 10.69DD123 pKa = 3.89VTSSSNATGGGVNNTTTSGAVTVSGSGVAIAGTIGTSPSNGGGQAANGTALTAGGTFNGTAGLNEE188 pKa = 4.38NFTGNAAALVGTTVNGNNGDD208 pKa = 3.7TDD210 pKa = 4.43TITISGGGTVNIGSGNTITNIKK232 pKa = 8.21TLTMDD237 pKa = 3.62SAAANVVFFSVANSGITTVNGGSGNDD263 pKa = 3.66YY264 pKa = 11.26VDD266 pKa = 4.34LANSGNSMLAGNVNLGTGTNTLVMEE291 pKa = 5.0GKK293 pKa = 8.63TYY295 pKa = 10.45TGTFVSGSGTSDD307 pKa = 2.84TLYY310 pKa = 10.92LFNGSNISAANVSGFEE326 pKa = 4.14TVNINNNASVTMTAAQFAGFTTFTAGGTEE355 pKa = 4.37TVNLTTAGTVTANANVEE372 pKa = 4.16NYY374 pKa = 10.01VLANGSNTFTGAAGLISVNGGTGSDD399 pKa = 4.01TINVSSVMISATVAPNGINGGLGADD424 pKa = 3.94TLNVSAVTAALDD436 pKa = 3.48MSAKK440 pKa = 8.0VTGVEE445 pKa = 4.38TVNVTGGTNAAWTVTNEE462 pKa = 3.64NGAGVTLNFTKK473 pKa = 10.67SAANDD478 pKa = 3.42INNITLGSGGQTLNILGTGTGRR500 pKa = 11.84TTITGGSGADD510 pKa = 3.77IINLSATATGADD522 pKa = 4.14AIALGSNINAIDD534 pKa = 3.54TVNNFKK540 pKa = 10.83AAGADD545 pKa = 3.71LFATGVVPTSLNNLSIANADD565 pKa = 3.76SSNLAAAIATAATAAGATLANTGQAYY591 pKa = 8.61TIVVNSGTAAGIYY604 pKa = 10.02AFQNTGGSVGAVDD617 pKa = 3.37TGDD620 pKa = 4.34FIVKK624 pKa = 10.53LGGTTGTIFATDD636 pKa = 3.68FGIANAVAVTPGGTFNGTAGANDD659 pKa = 3.47IFMSTIPGLNGTTIAGNAADD679 pKa = 4.34TDD681 pKa = 4.16VLTLTTAGTVTINNGSTGGTLSNLKK706 pKa = 9.93VLNLANGTNTITYY719 pKa = 7.22NTSAGFTTINGGSGDD734 pKa = 3.91DD735 pKa = 3.47TFIPNTALLPIVVSGGLGTDD755 pKa = 4.11TIVLSAAYY763 pKa = 9.47AAVASGSGTFAGNVTGFEE781 pKa = 4.29KK782 pKa = 10.84LRR784 pKa = 11.84LTSVTNQTIDD794 pKa = 3.29LQTLGNYY801 pKa = 10.24SDD803 pKa = 3.85VTFSGANGLTMSNLPSNGNITLNGTGTAFTISNAAFAGGVNDD845 pKa = 4.4IVNLTLTDD853 pKa = 3.69ASTSAVAFATTGITASGVEE872 pKa = 4.37TFNITTVDD880 pKa = 3.62GQATPTGLFNDD891 pKa = 3.99TLTILGNSVKK901 pKa = 10.56NIYY904 pKa = 10.29VSGNAGLTMPATSTSLINVDD924 pKa = 3.48ASGITLGGFTWTANALTSTATVKK947 pKa = 10.78GSASGTNTVNMNSATAGVDD966 pKa = 3.54YY967 pKa = 10.98TGGTGNDD974 pKa = 3.57NITINATVSSTAALGGGNNSLALNGVTLLGTYY1006 pKa = 7.55TAGNTGTDD1014 pKa = 3.04SLAFFSSTPDD1024 pKa = 2.96ISNATITGFEE1034 pKa = 4.22NLTVVNNANITMTAAQMAQFTGTVNASGTEE1064 pKa = 4.29TINLTTAGTVTAFSAVEE1081 pKa = 4.26KK1082 pKa = 11.03YY1083 pKa = 10.95NLANGTNNFTSANVAVSVIGGTGTDD1108 pKa = 3.41TFNFTANQIANFLTTVDD1125 pKa = 4.43GGNGTDD1131 pKa = 3.59TLNVGATTTQNLDD1144 pKa = 3.24FSTKK1148 pKa = 9.12IASIEE1153 pKa = 4.08IINVAGSTGTASVTNPDD1170 pKa = 3.54GAGVTLNYY1178 pKa = 8.62TKK1180 pKa = 10.01STGDD1184 pKa = 3.23NTITLGTGGQTLNLLGSSASSTTVTGGAAVDD1215 pKa = 4.26TINLQFSGSGSEE1227 pKa = 4.13TLIEE1231 pKa = 4.18TGANMSNRR1239 pKa = 11.84TQVDD1243 pKa = 2.88IVGNFNSTGTDD1254 pKa = 3.49YY1255 pKa = 11.36FKK1257 pKa = 10.72TGVNAVSVGSYY1268 pKa = 10.24IIGNADD1274 pKa = 3.2TGNYY1278 pKa = 7.23LTTIASGLSIVLNNTGQSYY1297 pKa = 10.7LITIQTGTAAGTYY1310 pKa = 9.74LFQNTGSDD1318 pKa = 3.12TSQFDD1323 pKa = 3.3NTDD1326 pKa = 3.63FFVQLTGTIGGIGAGNLIAA1345 pKa = 5.87

Molecular weight: 131.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A318JMY3|A0A318JMY3_9BURK Uncharacterized protein OS=Undibacterium pigrum OX=401470 GN=DFR42_102579 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.57RR14 pKa = 11.84THH16 pKa = 5.79GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 8.8RR41 pKa = 11.84LAAA44 pKa = 4.42

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5704

0

5704

1883445

27

4271

330.2

36.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.924 ± 0.044

0.938 ± 0.011

5.266 ± 0.026

5.41 ± 0.034

3.883 ± 0.023

7.163 ± 0.035

2.23 ± 0.018

5.638 ± 0.024

4.798 ± 0.031

10.609 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.701 ± 0.015

3.748 ± 0.024

4.37 ± 0.023

4.534 ± 0.03

5.253 ± 0.024

6.339 ± 0.026

5.343 ± 0.031

6.735 ± 0.031

1.343 ± 0.014

2.773 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski