Aestuariirhabdus litorea

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Aestuariirhabdaceae; Aestuariirhabdus

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3340 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P3VIS1|A0A3P3VIS1_9GAMM Pantothenate synthetase OS=Aestuariirhabdus litorea OX=2528527 GN=panC PE=3 SV=1
MM1 pKa = 7.13YY2 pKa = 10.12LINAVRR8 pKa = 11.84VFTRR12 pKa = 11.84DD13 pKa = 2.82FDD15 pKa = 3.93NALAFYY21 pKa = 10.61EE22 pKa = 4.32EE23 pKa = 4.39TLGLEE28 pKa = 4.26VSSCDD33 pKa = 3.5EE34 pKa = 3.92EE35 pKa = 6.02AGFALFNTGPAKK47 pKa = 10.76LILEE51 pKa = 4.32QLDD54 pKa = 4.16DD55 pKa = 4.51ADD57 pKa = 3.97SDD59 pKa = 4.22LVGRR63 pKa = 11.84FSGISLAVEE72 pKa = 5.03DD73 pKa = 3.54IHH75 pKa = 9.2AEE77 pKa = 4.09YY78 pKa = 10.99EE79 pKa = 4.3EE80 pKa = 4.88LDD82 pKa = 3.56HH83 pKa = 7.92LGVEE87 pKa = 4.83FTGPPEE93 pKa = 3.95QQSWGGWLVHH103 pKa = 6.74LLDD106 pKa = 4.29YY107 pKa = 11.18DD108 pKa = 3.96NNIITLVGEE117 pKa = 4.4DD118 pKa = 3.31

Molecular weight: 13.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P3VJV9|A0A3P3VJV9_9GAMM Uncharacterized protein OS=Aestuariirhabdus litorea OX=2528527 GN=D0544_14235 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84ARR14 pKa = 11.84AHH16 pKa = 6.24GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.38NGRR28 pKa = 11.84LVIKK32 pKa = 10.39RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.18GRR39 pKa = 11.84KK40 pKa = 8.44QLTAA44 pKa = 3.91

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3340

0

3340

1102306

38

2400

330.0

36.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.899 ± 0.049

1.148 ± 0.017

5.164 ± 0.035

6.605 ± 0.043

3.524 ± 0.025

7.833 ± 0.041

2.205 ± 0.023

5.153 ± 0.035

3.335 ± 0.039

11.696 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.475 ± 0.019

3.057 ± 0.023

4.769 ± 0.03

4.696 ± 0.033

6.664 ± 0.039

6.209 ± 0.029

4.59 ± 0.025

6.971 ± 0.037

1.296 ± 0.016

2.71 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski