Gelidibacter gilvus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gelidibacter

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3732 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q0XA07|A0A4Q0XA07_9FLAO IS1182 family transposase OS=Gelidibacter gilvus OX=59602 GN=ESZ48_19115 PE=4 SV=1
AA1 pKa = 8.02QVITQDD7 pKa = 3.63ISIDD11 pKa = 3.36LDD13 pKa = 3.95ANGDD17 pKa = 3.54ASIIAAQVDD26 pKa = 3.79NGSNDD31 pKa = 3.12ACGIASMTVVPNTFSCSNIGANTVTLTVVDD61 pKa = 3.97NNGNSSSATATVTVNDD77 pKa = 3.41VTVAQVITQDD87 pKa = 3.24ISIDD91 pKa = 3.36LDD93 pKa = 3.95ANGDD97 pKa = 3.54ASIIAAQVDD106 pKa = 3.79NGSNDD111 pKa = 3.12ACGIASMTVVPSTFDD126 pKa = 3.22CSNIGTNTVTLTVVDD141 pKa = 3.97NNGNSSSATATVTVNDD157 pKa = 3.3VTAAQVITQDD167 pKa = 3.52ISIDD171 pKa = 3.36LDD173 pKa = 3.95ANGDD177 pKa = 3.54ASIIAAQVDD186 pKa = 3.79NGSNDD191 pKa = 3.12ACGIASMTVVPNTFDD206 pKa = 3.67CSNIGANTVTLTVVDD221 pKa = 4.02VNGNSSSATATVTVNDD237 pKa = 3.36VTLAQVITQDD247 pKa = 3.68ISIDD251 pKa = 3.36LDD253 pKa = 3.95ANGDD257 pKa = 3.54ASIIAAQVDD266 pKa = 3.79NGSNDD271 pKa = 3.12ACGIASMTVVPNTFDD286 pKa = 3.67CSNIGANTVTLTVVDD301 pKa = 3.97NNGNSSSATATVTVNDD317 pKa = 3.42VTVAQVVTQDD327 pKa = 3.2ISIDD331 pKa = 3.54LDD333 pKa = 3.6ASGDD337 pKa = 3.58ASIIAAQVDD346 pKa = 4.1DD347 pKa = 4.94GSNDD351 pKa = 3.14ACGIASMTVVPNTFDD366 pKa = 3.67CSNIGANTVTLTVVDD381 pKa = 4.02VNGNSSSATATVTVNDD397 pKa = 3.3VTAAQVITQDD407 pKa = 3.52ISIDD411 pKa = 3.36LDD413 pKa = 3.95ANGDD417 pKa = 3.54ASIIAAQVDD426 pKa = 3.79NGSNDD431 pKa = 3.12ACGIASMTVVPNTFDD446 pKa = 3.67CSNIGANTVTLTVVDD461 pKa = 3.97NNGNSSSATATVTVNDD477 pKa = 3.3VTAAQVITQNTSIDD491 pKa = 3.4LDD493 pKa = 4.08ANGNASIVPADD504 pKa = 3.8VDD506 pKa = 3.65NGSNDD511 pKa = 3.17ACGIASMTVTPNTFDD526 pKa = 3.9CSNIGANTVTLTVVDD541 pKa = 4.76LNGNSNSAMATVTVNDD557 pKa = 3.93VIAAQVITQNISLDD571 pKa = 3.42LDD573 pKa = 4.15ANGGASIVPADD584 pKa = 3.9VDD586 pKa = 3.79NGSSDD591 pKa = 3.37ACGIASMTVTPNTFDD606 pKa = 3.7CSNVGANTVTLTVTDD621 pKa = 3.47VNGNVSSATANVTVNDD637 pKa = 3.63ITPAIVITQNTSIDD651 pKa = 3.4LDD653 pKa = 4.08ANGNASIVPADD664 pKa = 3.8VDD666 pKa = 3.65NGSNDD671 pKa = 3.04ACGIANMTVSPNTFDD686 pKa = 4.69CSNLGMNTVTLTVTDD701 pKa = 3.66VNGNISSATAVVSISDD717 pKa = 3.48NTAPDD722 pKa = 3.93IVCVPDD728 pKa = 3.5GTRR731 pKa = 11.84DD732 pKa = 3.56TDD734 pKa = 3.91PGQCTYY740 pKa = 10.04TIQGAEE746 pKa = 3.89FDD748 pKa = 5.84AIFTDD753 pKa = 3.86NCSSGVITNSINGTATLAGEE773 pKa = 4.58VFMQGATEE781 pKa = 4.21VTWIVDD787 pKa = 3.59DD788 pKa = 4.21GHH790 pKa = 6.55GQTASCTTTITVEE803 pKa = 4.14DD804 pKa = 4.04NEE806 pKa = 4.43APIVDD811 pKa = 5.13CINIQVLLDD820 pKa = 3.46ASGNGTITVADD831 pKa = 3.82INNNSTDD838 pKa = 3.13NCGIASITLSQTSFDD853 pKa = 4.26CSDD856 pKa = 2.98IGGDD860 pKa = 3.74LDD862 pKa = 3.71EE863 pKa = 6.1LIISEE868 pKa = 4.29YY869 pKa = 11.04SDD871 pKa = 3.13GTGNNDD877 pKa = 4.48CIEE880 pKa = 4.37IYY882 pKa = 10.71NGTGNPINLYY892 pKa = 10.8AEE894 pKa = 5.54GYY896 pKa = 6.78TLRR899 pKa = 11.84FYY901 pKa = 11.72YY902 pKa = 10.49NGSTSYY908 pKa = 9.54TQVPLLGTVADD919 pKa = 3.98RR920 pKa = 11.84EE921 pKa = 4.72VYY923 pKa = 9.54VVCNPFGPGAMQADD937 pKa = 3.7QTGNFGFDD945 pKa = 3.27GNDD948 pKa = 3.47AIALTKK954 pKa = 10.45AGNAIDD960 pKa = 4.31VIGQIGVNPGTGWTVGSNSTAGTTLVRR987 pKa = 11.84NKK989 pKa = 10.56DD990 pKa = 3.51VLYY993 pKa = 11.3GNINDD998 pKa = 3.49ISGISSEE1005 pKa = 3.94WTQYY1009 pKa = 9.75AQNNTSNLGSHH1020 pKa = 6.87EE1021 pKa = 4.1IEE1023 pKa = 4.38IADD1026 pKa = 3.86LAKK1029 pKa = 10.79NVILTVTDD1037 pKa = 3.2TSGNVSTCEE1046 pKa = 3.96GNVTVIDD1053 pKa = 4.45NIAPVAMCQSVTIQLDD1069 pKa = 3.72ANGVASVTASEE1080 pKa = 4.45VDD1082 pKa = 3.22NGSNDD1087 pKa = 3.16ACGIASLVLDD1097 pKa = 3.75QTDD1100 pKa = 4.32FTCANLGDD1108 pKa = 3.86NTVILTVTDD1117 pKa = 3.61NNGNSSSCEE1126 pKa = 3.62ATITVEE1132 pKa = 4.75DD1133 pKa = 4.69NIDD1136 pKa = 3.82PTVMTQDD1143 pKa = 3.64LTIQLDD1149 pKa = 4.07ANGSASITPADD1160 pKa = 4.14IDD1162 pKa = 3.69NGSIDD1167 pKa = 3.49NCGIATQTVTPNSFDD1182 pKa = 3.59CSNVGVNTVTLTVTDD1197 pKa = 3.44TSGNVSTGIATVTVEE1212 pKa = 5.14DD1213 pKa = 3.93NVAPIAICKK1222 pKa = 10.16NITVEE1227 pKa = 4.28LGINGEE1233 pKa = 4.13ATITGADD1240 pKa = 3.56VDD1242 pKa = 4.41NGSSDD1247 pKa = 3.35ACGIASLDD1255 pKa = 3.4VSPSVFGCADD1265 pKa = 3.02IGANTVTLTVTDD1277 pKa = 3.61NNGNVSTCSATVTVTGIVPVVTISQGPLPEE1307 pKa = 4.45FCQGAVLVLTAEE1319 pKa = 4.09SDD1321 pKa = 3.44EE1322 pKa = 4.41DD1323 pKa = 5.2FGYY1326 pKa = 11.06LWTTGEE1332 pKa = 4.34TTQSIEE1338 pKa = 3.71IPGNGTYY1345 pKa = 10.78GVTVTSLTNCSTEE1358 pKa = 3.97AEE1360 pKa = 4.08ITITGFNAGVLVSSYY1375 pKa = 10.74TIIASEE1381 pKa = 4.28KK1382 pKa = 10.43VEE1384 pKa = 4.19LKK1386 pKa = 11.13NNVIVQTGGVGVTKK1400 pKa = 10.68ASGEE1404 pKa = 4.08IKK1406 pKa = 9.92IEE1408 pKa = 4.05KK1409 pKa = 9.54ASHH1412 pKa = 5.5IVGLGQANKK1421 pKa = 10.13IEE1423 pKa = 4.28IKK1425 pKa = 10.28QGSSVGTAVYY1435 pKa = 10.33QPANPTIPAFVYY1447 pKa = 10.26NGYY1450 pKa = 10.08SSSSSPDD1457 pKa = 2.81VRR1459 pKa = 11.84VNNNQTLTLSGGVYY1473 pKa = 10.46NKK1475 pKa = 10.06VEE1477 pKa = 4.23LEE1479 pKa = 4.08EE1480 pKa = 4.19NATVLFTASNVYY1492 pKa = 10.3INEE1495 pKa = 4.17LKK1497 pKa = 9.52TKK1499 pKa = 10.22KK1500 pKa = 10.33SATIEE1505 pKa = 4.12FNGCTNVFLNKK1516 pKa = 9.67EE1517 pKa = 4.22FKK1519 pKa = 10.89LDD1521 pKa = 3.79DD1522 pKa = 3.97NGVFNSNGYY1531 pKa = 8.33MVTVYY1536 pKa = 10.59INDD1539 pKa = 3.52DD1540 pKa = 3.87FEE1542 pKa = 4.69VKK1544 pKa = 10.25KK1545 pKa = 11.2GSDD1548 pKa = 3.23FTGRR1552 pKa = 11.84VHH1554 pKa = 6.79TNNHH1558 pKa = 6.24DD1559 pKa = 3.7IEE1561 pKa = 4.83VEE1563 pKa = 4.11GHH1565 pKa = 5.97NSSTTYY1571 pKa = 7.51MTGLFIGKK1579 pKa = 9.26KK1580 pKa = 9.73VEE1582 pKa = 3.81ADD1584 pKa = 3.84KK1585 pKa = 11.54NVVWNADD1592 pKa = 3.95QYY1594 pKa = 11.69CDD1596 pKa = 3.93PCPIEE1601 pKa = 5.2APINNGGSEE1610 pKa = 4.8PITDD1614 pKa = 3.53YY1615 pKa = 11.25TIIAFDD1621 pKa = 3.88EE1622 pKa = 4.46VHH1624 pKa = 6.27LHH1626 pKa = 6.69GDD1628 pKa = 3.73NIVQTGGVGVTRR1640 pKa = 11.84HH1641 pKa = 5.19KK1642 pKa = 11.0KK1643 pKa = 9.89KK1644 pKa = 10.53IKK1646 pKa = 9.35LHH1648 pKa = 6.22KK1649 pKa = 9.85DD1650 pKa = 2.95SHH1652 pKa = 5.22ITEE1655 pKa = 4.38FAKK1658 pKa = 10.7ASQIQVNGGSSIGTRR1673 pKa = 11.84ILSPADD1679 pKa = 3.82PIIPLFVKK1687 pKa = 10.38NVYY1690 pKa = 10.51SNSSSPNATINSGQTVTLTGSVYY1713 pKa = 11.08DD1714 pKa = 4.39KK1715 pKa = 11.58VDD1717 pKa = 3.72LKK1719 pKa = 11.24EE1720 pKa = 3.97GATVIFAQSNVFINEE1735 pKa = 3.91LKK1737 pKa = 7.7TRR1739 pKa = 11.84KK1740 pKa = 9.39YY1741 pKa = 10.22ATIKK1745 pKa = 10.71FSGCTNVFIKK1755 pKa = 10.77KK1756 pKa = 8.76EE1757 pKa = 4.14FKK1759 pKa = 10.61LDD1761 pKa = 3.62DD1762 pKa = 3.85YY1763 pKa = 11.89GVINPEE1769 pKa = 3.86TDD1771 pKa = 2.59GHH1773 pKa = 5.84KK1774 pKa = 10.7VVFHH1778 pKa = 6.73VDD1780 pKa = 3.25DD1781 pKa = 4.75DD1782 pKa = 4.58VEE1784 pKa = 4.12IDD1786 pKa = 3.31KK1787 pKa = 11.39GSVVVASIYY1796 pKa = 10.69AYY1798 pKa = 10.64NDD1800 pKa = 3.41EE1801 pKa = 4.41IKK1803 pKa = 10.76VDD1805 pKa = 4.09GSSSDD1810 pKa = 3.68PVSMKK1815 pKa = 10.87GLFIAKK1821 pKa = 9.21KK1822 pKa = 8.11VHH1824 pKa = 5.15AHH1826 pKa = 7.15EE1827 pKa = 4.85DD1828 pKa = 3.75VLWNKK1833 pKa = 8.19DD1834 pKa = 3.45TSGSPCPVITPTAQAPVAPEE1854 pKa = 3.6VGNRR1858 pKa = 11.84SIEE1861 pKa = 4.39LISVKK1866 pKa = 10.18AWPNPSDD1873 pKa = 3.44TVFNLRR1879 pKa = 11.84LITEE1883 pKa = 4.13NQVDD1887 pKa = 4.25VVSILVFDD1895 pKa = 4.49SNNKK1899 pKa = 9.0LVHH1902 pKa = 6.35SSTFRR1907 pKa = 11.84PEE1909 pKa = 3.46AVYY1912 pKa = 10.61QFGNEE1917 pKa = 4.11LEE1919 pKa = 4.24SGVYY1923 pKa = 8.69IVKK1926 pKa = 10.19VSQAGSNAYY1935 pKa = 8.71TRR1937 pKa = 11.84VIKK1940 pKa = 10.41FF1941 pKa = 3.24

Molecular weight: 200.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q0XBG4|A0A4Q0XBG4_9FLAO Queuine tRNA-ribosyltransferase OS=Gelidibacter gilvus OX=59602 GN=tgt PE=3 SV=1
MM1 pKa = 7.05TRR3 pKa = 11.84GIRR6 pKa = 11.84FSVGSLQFAVFSWQSSVGSLQLAVFSWQSSVGSLQLAVFRR46 pKa = 11.84RR47 pKa = 11.84LL48 pKa = 3.16

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3732

0

3732

1309719

24

3758

350.9

39.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.446 ± 0.037

0.695 ± 0.013

5.821 ± 0.029

6.442 ± 0.035

5.204 ± 0.028

6.328 ± 0.037

1.951 ± 0.019

7.91 ± 0.037

7.529 ± 0.043

9.329 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.345 ± 0.021

5.948 ± 0.042

3.447 ± 0.022

3.447 ± 0.019

3.523 ± 0.024

6.552 ± 0.034

5.794 ± 0.044

6.181 ± 0.03

1.052 ± 0.013

4.057 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski