Salmon aquaparamyxovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Aquaparamyxovirus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2KTE9|A0A3G2KTE9_9MONO Hemagglutinin-neuraminidase protein OS=Salmon aquaparamyxovirus OX=381543 GN=HN PE=3 SV=1
MM1 pKa = 7.4SSYY4 pKa = 10.73GRR6 pKa = 11.84SAGKK10 pKa = 10.04DD11 pKa = 3.15KK12 pKa = 10.89QVEE15 pKa = 4.08RR16 pKa = 11.84QEE18 pKa = 4.41TSRR21 pKa = 11.84HH22 pKa = 4.81PNEE25 pKa = 4.52RR26 pKa = 11.84EE27 pKa = 3.87SLLDD31 pKa = 3.56SGLSNIQSLLRR42 pKa = 11.84DD43 pKa = 3.75INSSTRR49 pKa = 11.84TSQKK53 pKa = 10.68KK54 pKa = 9.84KK55 pKa = 10.25LNSGADD61 pKa = 3.92DD62 pKa = 3.63TSSTHH67 pKa = 6.06SASSSDD73 pKa = 3.53RR74 pKa = 11.84PRR76 pKa = 11.84DD77 pKa = 3.72NAGGTSDD84 pKa = 3.65RR85 pKa = 11.84RR86 pKa = 11.84VRR88 pKa = 11.84SQSQDD93 pKa = 2.47AVTQRR98 pKa = 11.84DD99 pKa = 3.86ISSLHH104 pKa = 6.58CDD106 pKa = 3.63DD107 pKa = 5.06PRR109 pKa = 11.84SQVNCSANKK118 pKa = 10.16RR119 pKa = 11.84STGPPAPQPRR129 pKa = 11.84GRR131 pKa = 11.84DD132 pKa = 3.29LHH134 pKa = 7.54KK135 pKa = 10.94GVVGVNEE142 pKa = 3.87IPPYY146 pKa = 10.47EE147 pKa = 5.12GGDD150 pKa = 3.12VDD152 pKa = 3.84QLVNEE157 pKa = 4.54EE158 pKa = 4.31EE159 pKa = 4.25EE160 pKa = 4.45ADD162 pKa = 3.39IPMAEE167 pKa = 4.21QQDD170 pKa = 4.29GADD173 pKa = 3.6EE174 pKa = 4.11EE175 pKa = 5.38SYY177 pKa = 10.92PEE179 pKa = 3.75QAGRR183 pKa = 11.84GSSARR188 pKa = 11.84SSLGGGSALAGWGRR202 pKa = 11.84QANTSSPAEE211 pKa = 3.8ISEE214 pKa = 4.71GYY216 pKa = 10.8DD217 pKa = 4.33DD218 pKa = 3.89VEE220 pKa = 4.08RR221 pKa = 11.84WAKK224 pKa = 10.3HH225 pKa = 4.13ATLPEE230 pKa = 4.38LFTRR234 pKa = 11.84VQSGPNGVCSPVAIVAEE251 pKa = 4.45EE252 pKa = 3.96AQLLYY257 pKa = 10.14TVEE260 pKa = 4.51PEE262 pKa = 3.84PVMSEE267 pKa = 4.02EE268 pKa = 4.15EE269 pKa = 3.77EE270 pKa = 4.41AMIDD274 pKa = 3.63QALNDD279 pKa = 4.22TLDD282 pKa = 3.36VDD284 pKa = 4.75SDD286 pKa = 3.97GGDD289 pKa = 3.49DD290 pKa = 4.25SPLIEE295 pKa = 4.3QMSVLLDD302 pKa = 5.88DD303 pKa = 4.07EE304 pKa = 5.17QEE306 pKa = 4.22WNNLDD311 pKa = 4.12QNRR314 pKa = 11.84GDD316 pKa = 3.34QDD318 pKa = 3.87QNQEE322 pKa = 4.11WKK324 pKa = 10.72DD325 pKa = 3.42SALNIGKK332 pKa = 9.62KK333 pKa = 6.65GHH335 pKa = 5.85RR336 pKa = 11.84RR337 pKa = 11.84EE338 pKa = 3.8VSIYY342 pKa = 8.27TRR344 pKa = 11.84NGICYY349 pKa = 9.97LDD351 pKa = 3.68TWCNPCCVPIRR362 pKa = 11.84VHH364 pKa = 5.37PTRR367 pKa = 11.84EE368 pKa = 3.5RR369 pKa = 11.84CICRR373 pKa = 11.84LCPEE377 pKa = 4.31TCGDD381 pKa = 3.86CAVATEE387 pKa = 4.95DD388 pKa = 3.73PTIPSII394 pKa = 4.6

Molecular weight: 43.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2KTD2|A0A3G2KTD2_9MONO V protein OS=Salmon aquaparamyxovirus OX=381543 GN=V PE=4 SV=1
MM1 pKa = 7.72AGLLARR7 pKa = 11.84INKK10 pKa = 8.09WRR12 pKa = 11.84GKK14 pKa = 9.55KK15 pKa = 9.52QADD18 pKa = 3.44TPMRR22 pKa = 11.84EE23 pKa = 4.31SLYY26 pKa = 9.78STQDD30 pKa = 3.02FPTFSPSSEE39 pKa = 3.7ISTPPPEE46 pKa = 4.27PPKK49 pKa = 10.5RR50 pKa = 11.84RR51 pKa = 11.84NLTVVPMTPRR61 pKa = 11.84APTPPQVLTGPGTMLVVHH79 pKa = 7.09PIGGYY84 pKa = 8.88DD85 pKa = 3.61PKK87 pKa = 11.27AKK89 pKa = 9.35TLSPSGILAAYY100 pKa = 8.99IATIQGARR108 pKa = 11.84SIAVLTRR115 pKa = 11.84DD116 pKa = 4.06LQDD119 pKa = 3.68LLLRR123 pKa = 11.84SPEE126 pKa = 3.63EE127 pKa = 4.21GIFIRR132 pKa = 11.84EE133 pKa = 4.09LLEE136 pKa = 3.8STRR139 pKa = 11.84YY140 pKa = 10.28LLMRR144 pKa = 11.84VEE146 pKa = 4.32MWISLLTRR154 pKa = 11.84KK155 pKa = 9.35KK156 pKa = 10.43RR157 pKa = 11.84PTYY160 pKa = 9.16QWLNNRR166 pKa = 11.84MEE168 pKa = 4.04QMKK171 pKa = 10.25RR172 pKa = 11.84VTLNKK177 pKa = 9.82PVEE180 pKa = 4.38DD181 pKa = 4.53LLLDD185 pKa = 3.75QAWVVVVPWLDD196 pKa = 3.41GEE198 pKa = 4.72GRR200 pKa = 11.84QILPARR206 pKa = 11.84QKK208 pKa = 10.57SLRR211 pKa = 11.84DD212 pKa = 3.3MTTLRR217 pKa = 11.84GGQSMQHH224 pKa = 5.43SQSFSPASRR233 pKa = 11.84ADD235 pKa = 3.42RR236 pKa = 11.84TEE238 pKa = 3.84YY239 pKa = 10.28VAQQ242 pKa = 3.89

Molecular weight: 27.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

5450

242

2213

681.3

75.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.294 ± 0.385

1.945 ± 0.273

6.11 ± 0.43

5.89 ± 0.574

2.917 ± 0.655

7.009 ± 0.615

1.725 ± 0.231

6.018 ± 0.586

5.138 ± 0.487

9.156 ± 0.463

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.789 ± 0.427

4.422 ± 0.336

4.899 ± 0.854

3.927 ± 0.369

5.266 ± 0.506

8.661 ± 0.786

6.312 ± 0.29

7.064 ± 0.362

1.229 ± 0.169

3.229 ± 0.343
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski