[Pantoea] beijingensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3521 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A443I8S4|A0A443I8S4_9GAMM Pyruvate dehydrogenase E1 component OS=[Pantoea] beijingensis OX=1324864 GN=aceE PE=4 SV=1
MM1 pKa = 7.37QKK3 pKa = 10.35YY4 pKa = 9.92CDD6 pKa = 3.6LVRR9 pKa = 11.84RR10 pKa = 11.84KK11 pKa = 9.59YY12 pKa = 11.11AEE14 pKa = 4.18IGSGDD19 pKa = 3.94LGYY22 pKa = 11.08VPDD25 pKa = 6.31AIGCVLNALDD35 pKa = 5.26RR36 pKa = 11.84IAANSEE42 pKa = 3.83LDD44 pKa = 3.45SSIRR48 pKa = 11.84EE49 pKa = 3.88QAAYY53 pKa = 9.92AAANLLVSDD62 pKa = 4.7YY63 pKa = 11.37VDD65 pKa = 3.35EE66 pKa = 4.49

Molecular weight: 7.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A443IH45|A0A443IH45_9GAMM Uncharacterized protein OS=[Pantoea] beijingensis OX=1324864 GN=ED28_03215 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.16GRR39 pKa = 11.84SRR41 pKa = 11.84LTVSKK46 pKa = 11.03

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3521

0

3521

1141336

35

2613

324.2

35.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.601 ± 0.046

1.024 ± 0.013

5.249 ± 0.035

5.527 ± 0.041

3.864 ± 0.028

7.375 ± 0.041

2.342 ± 0.021

6.019 ± 0.035

4.127 ± 0.035

11.037 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.744 ± 0.021

3.811 ± 0.03

4.416 ± 0.027

4.64 ± 0.045

5.772 ± 0.034

6.151 ± 0.03

5.253 ± 0.026

6.851 ± 0.029

1.463 ± 0.019

2.734 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski