Gordonia phage Fairfaxidum

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fairfaxidumvirus; Gordonia virus Fairfaxidum

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 81 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6T6G6|A0A4D6T6G6_9CAUD Uncharacterized protein OS=Gordonia phage Fairfaxidum OX=2572526 GN=38 PE=4 SV=1
MM1 pKa = 7.45FIEE4 pKa = 4.8FVLRR8 pKa = 11.84NAGFCFVLACCIGAGGYY25 pKa = 7.17TLYY28 pKa = 10.87DD29 pKa = 3.79LSRR32 pKa = 11.84GAFARR37 pKa = 11.84DD38 pKa = 4.15DD39 pKa = 3.57IDD41 pKa = 4.1ALTVHH46 pKa = 6.67KK47 pKa = 11.05GEE49 pKa = 4.29IVEE52 pKa = 4.1VDD54 pKa = 3.1QQ55 pKa = 5.45

Molecular weight: 6.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6T7N7|A0A4D6T7N7_9CAUD Lysin A OS=Gordonia phage Fairfaxidum OX=2572526 GN=20 PE=4 SV=1
MM1 pKa = 6.8TTPSPAMTIAAAAAEE16 pKa = 4.29PKK18 pKa = 10.0KK19 pKa = 11.06SKK21 pKa = 10.46ARR23 pKa = 11.84PDD25 pKa = 3.46RR26 pKa = 11.84DD27 pKa = 3.22LVVYY31 pKa = 7.56STKK34 pKa = 10.3SGRR37 pKa = 11.84WHH39 pKa = 6.39WKK41 pKa = 8.26VLSPNGQVVQARR53 pKa = 11.84SGPDD57 pKa = 3.13GYY59 pKa = 10.77RR60 pKa = 11.84RR61 pKa = 11.84RR62 pKa = 11.84DD63 pKa = 3.69DD64 pKa = 3.31ATVAARR70 pKa = 11.84RR71 pKa = 11.84FLTSIGSSAVRR82 pKa = 11.84LIVHH86 pKa = 6.86KK87 pKa = 10.85ADD89 pKa = 3.25GTIDD93 pKa = 3.85DD94 pKa = 4.71RR95 pKa = 11.84GQII98 pKa = 3.71

Molecular weight: 10.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

81

0

81

16210

42

1873

200.1

21.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.017 ± 0.538

0.802 ± 0.168

7.033 ± 0.314

5.645 ± 0.248

2.677 ± 0.185

8.476 ± 0.411

2.067 ± 0.186

4.503 ± 0.201

3.362 ± 0.319

7.736 ± 0.242

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.054 ± 0.193

2.684 ± 0.141

5.731 ± 0.253

3.455 ± 0.156

7.452 ± 0.421

5.423 ± 0.244

6.595 ± 0.389

7.958 ± 0.256

2.11 ± 0.16

2.221 ± 0.182
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski