Amino acid dipepetide frequency for Rosellinia necatrix partitivirus 6

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.369AlaAla: 3.369 ± 1.444
0.0AlaCys: 0.0 ± 0.0
2.695AlaAsp: 2.695 ± 0.034
4.043AlaGlu: 4.043 ± 0.985
2.022AlaPhe: 2.022 ± 0.493
1.348AlaGly: 1.348 ± 0.017
2.695AlaHis: 2.695 ± 0.034
5.391AlaIle: 5.391 ± 1.002
1.348AlaLys: 1.348 ± 0.951
6.739AlaLeu: 6.739 ± 0.085
2.695AlaMet: 2.695 ± 0.769
4.043AlaAsn: 4.043 ± 0.985
6.065AlaPro: 6.065 ± 0.544
3.369AlaGln: 3.369 ± 0.425
5.391AlaArg: 5.391 ± 1.8
5.391AlaSer: 5.391 ± 1.002
4.717AlaThr: 4.717 ± 1.461
2.695AlaVal: 2.695 ± 0.968
0.0AlaTrp: 0.0 ± 0.0
5.391AlaTyr: 5.391 ± 0.068
0.0AlaXaa: 0.0 ± 0.0
Cys
0.674CysAla: 0.674 ± 0.459
0.674CysCys: 0.674 ± 0.459
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
1.348CysIle: 1.348 ± 0.017
1.348CysLys: 1.348 ± 0.917
0.674CysLeu: 0.674 ± 0.476
0.0CysMet: 0.0 ± 0.0
1.348CysAsn: 1.348 ± 0.917
0.674CysPro: 0.674 ± 0.459
0.0CysGln: 0.0 ± 0.0
0.674CysArg: 0.674 ± 0.459
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.369AspAla: 3.369 ± 1.444
0.674AspCys: 0.674 ± 0.459
2.695AspAsp: 2.695 ± 0.9
6.065AspGlu: 6.065 ± 0.391
2.695AspPhe: 2.695 ± 0.034
2.695AspGly: 2.695 ± 1.834
2.022AspHis: 2.022 ± 1.427
2.022AspIle: 2.022 ± 1.376
2.695AspLys: 2.695 ± 0.9
4.717AspLeu: 4.717 ± 0.408
0.0AspMet: 0.0 ± 0.0
4.043AspAsn: 4.043 ± 0.985
4.043AspPro: 4.043 ± 0.883
2.022AspGln: 2.022 ± 1.376
4.717AspArg: 4.717 ± 0.527
4.717AspSer: 4.717 ± 1.342
6.739AspThr: 6.739 ± 0.085
1.348AspVal: 1.348 ± 0.017
1.348AspTrp: 1.348 ± 0.017
2.695AspTyr: 2.695 ± 1.834
0.0AspXaa: 0.0 ± 0.0
Glu
2.695GluAla: 2.695 ± 0.034
0.0GluCys: 0.0 ± 0.0
2.695GluAsp: 2.695 ± 0.9
3.369GluGlu: 3.369 ± 1.359
3.369GluPhe: 3.369 ± 0.51
2.022GluGly: 2.022 ± 1.427
3.369GluHis: 3.369 ± 1.359
4.717GluIle: 4.717 ± 1.342
0.674GluLys: 0.674 ± 0.459
3.369GluLeu: 3.369 ± 0.51
0.674GluMet: 0.674 ± 0.459
2.022GluAsn: 2.022 ± 0.493
0.674GluPro: 0.674 ± 0.476
2.022GluGln: 2.022 ± 0.442
1.348GluArg: 1.348 ± 0.917
4.043GluSer: 4.043 ± 0.883
3.369GluThr: 3.369 ± 1.444
1.348GluVal: 1.348 ± 0.951
0.674GluTrp: 0.674 ± 0.459
3.369GluTyr: 3.369 ± 1.359
0.0GluXaa: 0.0 ± 0.0
Phe
6.065PheAla: 6.065 ± 1.478
0.674PheCys: 0.674 ± 0.459
1.348PheAsp: 1.348 ± 0.917
2.022PheGlu: 2.022 ± 0.493
2.695PhePhe: 2.695 ± 0.968
4.717PheGly: 4.717 ± 1.461
2.022PheHis: 2.022 ± 0.442
2.695PheIle: 2.695 ± 0.9
3.369PheLys: 3.369 ± 1.444
8.086PheLeu: 8.086 ± 0.102
1.348PheMet: 1.348 ± 0.017
3.369PheAsn: 3.369 ± 1.359
2.695PhePro: 2.695 ± 0.034
0.0PheGln: 0.0 ± 0.0
1.348PheArg: 1.348 ± 0.017
4.043PheSer: 4.043 ± 0.051
4.043PheThr: 4.043 ± 0.051
4.717PheVal: 4.717 ± 0.408
0.0PheTrp: 0.0 ± 0.0
4.717PheTyr: 4.717 ± 0.408
0.0PheXaa: 0.0 ± 0.0
Gly
2.022GlyAla: 2.022 ± 0.442
0.0GlyCys: 0.0 ± 0.0
1.348GlyAsp: 1.348 ± 0.917
0.0GlyGlu: 0.0 ± 0.0
2.022GlyPhe: 2.022 ± 0.493
0.0GlyGly: 0.0 ± 0.0
0.0GlyHis: 0.0 ± 0.0
1.348GlyIle: 1.348 ± 0.017
0.674GlyLys: 0.674 ± 0.459
5.391GlyLeu: 5.391 ± 0.068
1.348GlyMet: 1.348 ± 0.917
0.674GlyAsn: 0.674 ± 0.476
3.369GlyPro: 3.369 ± 0.51
2.695GlyGln: 2.695 ± 0.034
0.674GlyArg: 0.674 ± 0.476
4.043GlySer: 4.043 ± 1.919
3.369GlyThr: 3.369 ± 1.359
2.022GlyVal: 2.022 ± 0.442
0.0GlyTrp: 0.0 ± 0.0
6.065GlyTyr: 6.065 ± 2.259
0.0GlyXaa: 0.0 ± 0.0
His
2.022HisAla: 2.022 ± 0.442
0.0HisCys: 0.0 ± 0.0
2.022HisAsp: 2.022 ± 0.493
2.022HisGlu: 2.022 ± 0.442
4.717HisPhe: 4.717 ± 0.527
2.022HisGly: 2.022 ± 0.442
0.674HisHis: 0.674 ± 0.476
1.348HisIle: 1.348 ± 0.017
1.348HisLys: 1.348 ± 0.917
1.348HisLeu: 1.348 ± 0.017
1.348HisMet: 1.348 ± 0.017
2.022HisAsn: 2.022 ± 0.442
3.369HisPro: 3.369 ± 0.51
1.348HisGln: 1.348 ± 0.951
1.348HisArg: 1.348 ± 0.951
1.348HisSer: 1.348 ± 0.017
3.369HisThr: 3.369 ± 1.359
2.695HisVal: 2.695 ± 0.9
0.0HisTrp: 0.0 ± 0.0
1.348HisTyr: 1.348 ± 0.951
0.0HisXaa: 0.0 ± 0.0
Ile
2.022IleAla: 2.022 ± 0.493
0.0IleCys: 0.0 ± 0.0
5.391IleAsp: 5.391 ± 1.8
4.043IleGlu: 4.043 ± 0.883
2.695IlePhe: 2.695 ± 0.034
1.348IleGly: 1.348 ± 0.917
2.022IleHis: 2.022 ± 0.442
4.043IleIle: 4.043 ± 0.051
4.043IleLys: 4.043 ± 0.985
3.369IleLeu: 3.369 ± 0.51
2.022IleMet: 2.022 ± 0.442
3.369IleAsn: 3.369 ± 1.444
4.717IlePro: 4.717 ± 1.461
2.695IleGln: 2.695 ± 0.034
1.348IleArg: 1.348 ± 0.917
4.043IleSer: 4.043 ± 0.051
5.391IleThr: 5.391 ± 0.068
2.695IleVal: 2.695 ± 0.034
0.674IleTrp: 0.674 ± 0.459
4.717IleTyr: 4.717 ± 1.342
0.0IleXaa: 0.0 ± 0.0
Lys
1.348LysAla: 1.348 ± 0.017
0.674LysCys: 0.674 ± 0.459
0.0LysAsp: 0.0 ± 0.0
2.695LysGlu: 2.695 ± 0.9
2.695LysPhe: 2.695 ± 1.902
2.695LysGly: 2.695 ± 0.034
0.674LysHis: 0.674 ± 0.459
2.695LysIle: 2.695 ± 1.834
1.348LysLys: 1.348 ± 0.951
3.369LysLeu: 3.369 ± 1.359
0.674LysMet: 0.674 ± 0.476
1.348LysAsn: 1.348 ± 0.951
2.022LysPro: 2.022 ± 1.376
0.674LysGln: 0.674 ± 0.459
2.022LysArg: 2.022 ± 1.376
2.022LysSer: 2.022 ± 0.442
5.391LysThr: 5.391 ± 1.002
2.695LysVal: 2.695 ± 0.968
1.348LysTrp: 1.348 ± 0.917
2.022LysTyr: 2.022 ± 0.442
0.0LysXaa: 0.0 ± 0.0
Leu
7.412LeuAla: 7.412 ± 1.495
0.0LeuCys: 0.0 ± 0.0
8.086LeuAsp: 8.086 ± 0.102
2.695LeuGlu: 2.695 ± 0.034
6.739LeuPhe: 6.739 ± 0.085
1.348LeuGly: 1.348 ± 0.917
3.369LeuHis: 3.369 ± 1.359
2.695LeuIle: 2.695 ± 1.834
3.369LeuLys: 3.369 ± 0.425
7.412LeuLeu: 7.412 ± 1.495
1.348LeuMet: 1.348 ± 0.951
4.043LeuAsn: 4.043 ± 0.985
8.086LeuPro: 8.086 ± 0.832
4.043LeuGln: 4.043 ± 1.817
4.717LeuArg: 4.717 ± 0.408
6.065LeuSer: 6.065 ± 1.478
6.065LeuThr: 6.065 ± 0.391
4.043LeuVal: 4.043 ± 0.051
1.348LeuTrp: 1.348 ± 0.017
2.022LeuTyr: 2.022 ± 0.493
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.674MetAsp: 0.674 ± 0.459
0.0MetGlu: 0.0 ± 0.0
1.348MetPhe: 1.348 ± 0.017
0.0MetGly: 0.0 ± 0.0
1.348MetHis: 1.348 ± 0.951
1.348MetIle: 1.348 ± 0.017
0.674MetLys: 0.674 ± 0.476
0.674MetLeu: 0.674 ± 0.459
0.0MetMet: 0.0 ± 0.0
1.348MetAsn: 1.348 ± 0.017
0.674MetPro: 0.674 ± 0.476
0.674MetGln: 0.674 ± 0.476
0.674MetArg: 0.674 ± 0.459
2.022MetSer: 2.022 ± 0.442
6.065MetThr: 6.065 ± 0.544
0.674MetVal: 0.674 ± 0.459
0.0MetTrp: 0.0 ± 0.0
3.369MetTyr: 3.369 ± 1.359
0.0MetXaa: 0.0 ± 0.0
Asn
3.369AsnAla: 3.369 ± 1.359
0.0AsnCys: 0.0 ± 0.0
2.695AsnAsp: 2.695 ± 1.902
1.348AsnGlu: 1.348 ± 0.017
5.391AsnPhe: 5.391 ± 0.068
0.674AsnGly: 0.674 ± 0.476
3.369AsnHis: 3.369 ± 0.51
4.717AsnIle: 4.717 ± 0.527
2.695AsnLys: 2.695 ± 0.9
4.717AsnLeu: 4.717 ± 0.527
3.369AsnMet: 3.369 ± 0.425
4.043AsnAsn: 4.043 ± 0.051
3.369AsnPro: 3.369 ± 2.378
0.674AsnGln: 0.674 ± 0.476
2.695AsnArg: 2.695 ± 0.9
1.348AsnSer: 1.348 ± 0.017
2.695AsnThr: 2.695 ± 0.034
2.022AsnVal: 2.022 ± 0.493
0.0AsnTrp: 0.0 ± 0.0
4.043AsnTyr: 4.043 ± 1.919
0.0AsnXaa: 0.0 ± 0.0
Pro
3.369ProAla: 3.369 ± 0.51
0.674ProCys: 0.674 ± 0.459
5.391ProAsp: 5.391 ± 0.866
4.043ProGlu: 4.043 ± 0.051
2.022ProPhe: 2.022 ± 1.376
4.043ProGly: 4.043 ± 0.051
1.348ProHis: 1.348 ± 0.951
3.369ProIle: 3.369 ± 1.444
3.369ProLys: 3.369 ± 0.425
5.391ProLeu: 5.391 ± 1.8
0.0ProMet: 0.0 ± 0.0
3.369ProAsn: 3.369 ± 1.444
3.369ProPro: 3.369 ± 1.359
0.674ProGln: 0.674 ± 0.459
1.348ProArg: 1.348 ± 0.017
4.717ProSer: 4.717 ± 0.527
10.782ProThr: 10.782 ± 1.07
4.043ProVal: 4.043 ± 0.985
0.0ProTrp: 0.0 ± 0.0
3.369ProTyr: 3.369 ± 0.51
0.0ProXaa: 0.0 ± 0.0
Gln
4.043GlnAla: 4.043 ± 0.985
0.674GlnCys: 0.674 ± 0.459
2.022GlnAsp: 2.022 ± 0.442
0.674GlnGlu: 0.674 ± 0.459
5.391GlnPhe: 5.391 ± 0.068
0.674GlnGly: 0.674 ± 0.459
2.022GlnHis: 2.022 ± 0.442
2.022GlnIle: 2.022 ± 1.376
1.348GlnLys: 1.348 ± 0.917
2.022GlnLeu: 2.022 ± 0.442
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
2.695GlnPro: 2.695 ± 0.9
2.695GlnGln: 2.695 ± 0.034
2.022GlnArg: 2.022 ± 0.442
3.369GlnSer: 3.369 ± 0.51
0.0GlnThr: 0.0 ± 0.0
0.674GlnVal: 0.674 ± 0.476
0.0GlnTrp: 0.0 ± 0.0
2.695GlnTyr: 2.695 ± 1.834
0.0GlnXaa: 0.0 ± 0.0
Arg
3.369ArgAla: 3.369 ± 0.51
0.0ArgCys: 0.0 ± 0.0
5.391ArgAsp: 5.391 ± 0.068
1.348ArgGlu: 1.348 ± 0.917
1.348ArgPhe: 1.348 ± 0.017
0.674ArgGly: 0.674 ± 0.459
1.348ArgHis: 1.348 ± 0.951
4.717ArgIle: 4.717 ± 0.527
3.369ArgLys: 3.369 ± 2.293
4.717ArgLeu: 4.717 ± 2.276
2.695ArgMet: 2.695 ± 1.155
2.695ArgAsn: 2.695 ± 1.834
4.043ArgPro: 4.043 ± 1.817
2.022ArgGln: 2.022 ± 0.442
5.391ArgArg: 5.391 ± 0.866
4.043ArgSer: 4.043 ± 1.919
3.369ArgThr: 3.369 ± 1.444
0.674ArgVal: 0.674 ± 0.476
0.0ArgTrp: 0.0 ± 0.0
2.022ArgTyr: 2.022 ± 0.442
0.0ArgXaa: 0.0 ± 0.0
Ser
5.391SerAla: 5.391 ± 2.87
1.348SerCys: 1.348 ± 0.017
4.043SerAsp: 4.043 ± 0.051
1.348SerGlu: 1.348 ± 0.951
3.369SerPhe: 3.369 ± 2.293
5.391SerGly: 5.391 ± 0.068
2.022SerHis: 2.022 ± 1.376
5.391SerIle: 5.391 ± 2.87
2.022SerLys: 2.022 ± 0.442
6.065SerLeu: 6.065 ± 0.544
0.674SerMet: 0.674 ± 0.476
4.043SerAsn: 4.043 ± 0.985
2.022SerPro: 2.022 ± 0.493
2.695SerGln: 2.695 ± 0.968
6.065SerArg: 6.065 ± 1.478
5.391SerSer: 5.391 ± 0.068
3.369SerThr: 3.369 ± 0.51
4.043SerVal: 4.043 ± 0.051
1.348SerTrp: 1.348 ± 0.017
3.369SerTyr: 3.369 ± 0.51
0.0SerXaa: 0.0 ± 0.0
Thr
8.086ThrAla: 8.086 ± 1.97
0.0ThrCys: 0.0 ± 0.0
7.412ThrAsp: 7.412 ± 0.374
4.043ThrGlu: 4.043 ± 0.051
5.391ThrPhe: 5.391 ± 0.866
4.717ThrGly: 4.717 ± 1.342
2.022ThrHis: 2.022 ± 1.427
6.065ThrIle: 6.065 ± 0.544
2.695ThrLys: 2.695 ± 0.968
4.717ThrLeu: 4.717 ± 1.461
2.022ThrMet: 2.022 ± 0.442
5.391ThrAsn: 5.391 ± 1.936
4.717ThrPro: 4.717 ± 2.395
2.022ThrGln: 2.022 ± 1.376
4.717ThrArg: 4.717 ± 2.276
4.043ThrSer: 4.043 ± 0.985
13.477ThrThr: 13.477 ± 3.906
4.043ThrVal: 4.043 ± 2.853
1.348ThrTrp: 1.348 ± 0.951
4.043ThrTyr: 4.043 ± 0.883
0.0ThrXaa: 0.0 ± 0.0
Val
3.369ValAla: 3.369 ± 0.51
0.0ValCys: 0.0 ± 0.0
1.348ValAsp: 1.348 ± 0.917
0.674ValGlu: 0.674 ± 0.476
3.369ValPhe: 3.369 ± 0.51
0.674ValGly: 0.674 ± 0.476
0.674ValHis: 0.674 ± 0.459
3.369ValIle: 3.369 ± 0.425
1.348ValLys: 1.348 ± 0.017
6.739ValLeu: 6.739 ± 1.019
0.674ValMet: 0.674 ± 0.476
0.674ValAsn: 0.674 ± 0.476
3.369ValPro: 3.369 ± 0.51
0.674ValGln: 0.674 ± 0.459
2.695ValArg: 2.695 ± 0.034
4.043ValSer: 4.043 ± 1.919
6.739ValThr: 6.739 ± 2.887
0.0ValVal: 0.0 ± 0.0
0.0ValTrp: 0.0 ± 0.0
2.695ValTyr: 2.695 ± 0.968
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.674TrpAsp: 0.674 ± 0.476
0.674TrpGlu: 0.674 ± 0.476
0.674TrpPhe: 0.674 ± 0.476
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.674TrpLys: 0.674 ± 0.459
0.674TrpLeu: 0.674 ± 0.459
0.0TrpMet: 0.0 ± 0.0
0.674TrpAsn: 0.674 ± 0.459
0.0TrpPro: 0.0 ± 0.0
1.348TrpGln: 1.348 ± 0.917
0.0TrpArg: 0.0 ± 0.0
1.348TrpSer: 1.348 ± 0.017
0.674TrpThr: 0.674 ± 0.476
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.674TrpTyr: 0.674 ± 0.459
0.0TrpXaa: 0.0 ± 0.0
Tyr
7.412TyrAla: 7.412 ± 2.242
2.022TyrCys: 2.022 ± 0.442
5.391TyrAsp: 5.391 ± 1.8
4.717TyrGlu: 4.717 ± 2.276
2.022TyrPhe: 2.022 ± 0.442
2.022TyrGly: 2.022 ± 0.442
4.717TyrHis: 4.717 ± 0.408
1.348TyrIle: 1.348 ± 0.017
0.0TyrLys: 0.0 ± 0.0
4.717TyrLeu: 4.717 ± 0.408
0.0TyrMet: 0.0 ± 0.0
4.717TyrAsn: 4.717 ± 0.408
4.717TyrPro: 4.717 ± 1.342
2.695TyrGln: 2.695 ± 0.9
4.717TyrArg: 4.717 ± 0.527
3.369TyrSer: 3.369 ± 1.444
1.348TyrThr: 1.348 ± 0.017
2.695TyrVal: 2.695 ± 1.902
0.0TyrTrp: 0.0 ± 0.0
1.348TyrTyr: 1.348 ± 0.017
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1485 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski