Candidatus Kinetoplastibacterium sorsogonicusi

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Betaproteobacteria incertae sedis; Candidatus Kinetoplastibacterium

Average proteome isoelectric point is 7.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 670 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S7J9Q3|A0A3S7J9Q3_9PROT Miniconductance mechanosensitive channel YbdG OS=Candidatus Kinetoplastibacterium sorsogonicusi OX=1576550 GN=ybdG PE=4 SV=1
MM1 pKa = 7.17QFKK4 pKa = 10.41DD5 pKa = 3.36QEE7 pKa = 4.43LLVDD11 pKa = 4.11VSTAAIDD18 pKa = 3.37TGGYY22 pKa = 10.42GVFLTVTAEE31 pKa = 4.0GGTEE35 pKa = 3.42IGTTFSYY42 pKa = 10.65LGSCEE47 pKa = 4.02SLYY50 pKa = 10.11EE51 pKa = 4.0ARR53 pKa = 11.84YY54 pKa = 8.64LAEE57 pKa = 4.34NFAKK61 pKa = 10.54NWVAEE66 pKa = 4.11NLLSS70 pKa = 4.03

Molecular weight: 7.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3Q8EQY5|A0A3Q8EQY5_9PROT Transport permease protein OS=Candidatus Kinetoplastibacterium sorsogonicusi OX=1576550 GN=yadH PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.17RR14 pKa = 11.84THH16 pKa = 5.95GFRR19 pKa = 11.84IRR21 pKa = 11.84MKK23 pKa = 9.35TRR25 pKa = 11.84AGRR28 pKa = 11.84AILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.56GRR39 pKa = 11.84KK40 pKa = 8.68RR41 pKa = 11.84LSVV44 pKa = 3.2

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

670

0

670

222456

30

1851

332.0

37.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.954 ± 0.094

1.153 ± 0.028

5.113 ± 0.064

5.337 ± 0.075

4.659 ± 0.071

5.535 ± 0.084

1.963 ± 0.029

12.489 ± 0.122

8.673 ± 0.088

9.787 ± 0.085

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.17 ± 0.041

8.416 ± 0.115

3.024 ± 0.046

2.804 ± 0.042

3.359 ± 0.068

7.138 ± 0.06

4.165 ± 0.049

4.6 ± 0.074

0.85 ± 0.026

3.811 ± 0.06
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski