Clostridium luticellarii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3630 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T0BR04|A0A2T0BR04_9CLOT Putative permease OS=Clostridium luticellarii OX=1691940 GN=CLLU_06300 PE=3 SV=1
MM1 pKa = 7.3KK2 pKa = 10.68AEE4 pKa = 4.55IDD6 pKa = 3.61RR7 pKa = 11.84EE8 pKa = 4.47GCISCGLCVSMCPEE22 pKa = 4.44VFRR25 pKa = 11.84MGDD28 pKa = 3.32DD29 pKa = 3.96GPAEE33 pKa = 4.38VYY35 pKa = 10.58VDD37 pKa = 5.42PIPSDD42 pKa = 3.73AEE44 pKa = 3.95NSALEE49 pKa = 4.33ARR51 pKa = 11.84DD52 pKa = 3.79GCPVSVITIEE62 pKa = 3.81

Molecular weight: 6.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T0B7I5|A0A2T0B7I5_9CLOT Inner membrane protein YghB OS=Clostridium luticellarii OX=1691940 GN=yghB_1 PE=3 SV=1
MM1 pKa = 7.45WMTYY5 pKa = 7.15QPKK8 pKa = 9.57KK9 pKa = 8.72KK10 pKa = 9.51QRR12 pKa = 11.84KK13 pKa = 8.04RR14 pKa = 11.84EE15 pKa = 3.69HH16 pKa = 6.25GFRR19 pKa = 11.84KK20 pKa = 9.97RR21 pKa = 11.84MRR23 pKa = 11.84TLSGRR28 pKa = 11.84NVIKK32 pKa = 10.55RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.17GRR39 pKa = 11.84KK40 pKa = 8.99RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3630

0

3630

1076556

29

2877

296.6

33.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.988 ± 0.045

1.353 ± 0.02

5.589 ± 0.034

6.641 ± 0.046

4.344 ± 0.031

6.744 ± 0.036

1.418 ± 0.015

9.441 ± 0.044

8.87 ± 0.044

8.786 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.779 ± 0.02

5.824 ± 0.037

3.024 ± 0.024

2.559 ± 0.02

3.827 ± 0.029

6.646 ± 0.032

4.692 ± 0.034

6.683 ± 0.03

0.739 ± 0.013

4.052 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski