Amino acid dipepetide frequency for Common bean-associated gemycircularvirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.504AlaAla: 6.504 ± 1.952
1.626AlaCys: 1.626 ± 1.09
3.252AlaAsp: 3.252 ± 2.179
1.626AlaGlu: 1.626 ± 1.317
1.626AlaPhe: 1.626 ± 1.317
6.504AlaGly: 6.504 ± 0.454
0.0AlaHis: 0.0 ± 0.0
3.252AlaIle: 3.252 ± 0.227
3.252AlaLys: 3.252 ± 0.227
0.0AlaLeu: 0.0 ± 0.0
1.626AlaMet: 1.626 ± 1.09
1.626AlaAsn: 1.626 ± 1.317
1.626AlaPro: 1.626 ± 1.09
0.0AlaGln: 0.0 ± 0.0
9.756AlaArg: 9.756 ± 1.725
3.252AlaSer: 3.252 ± 0.227
11.382AlaThr: 11.382 ± 4.403
3.252AlaVal: 3.252 ± 2.633
1.626AlaTrp: 1.626 ± 1.09
4.878AlaTyr: 4.878 ± 0.863
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
1.626CysCys: 1.626 ± 1.317
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
3.252CysPhe: 3.252 ± 0.227
1.626CysGly: 1.626 ± 1.09
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.626CysLeu: 1.626 ± 1.09
0.0CysMet: 0.0 ± 0.0
4.878CysAsn: 4.878 ± 3.269
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.626CysSer: 1.626 ± 1.09
1.626CysThr: 1.626 ± 1.317
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.626CysTyr: 1.626 ± 1.317
0.0CysXaa: 0.0 ± 0.0
Asp
3.252AspAla: 3.252 ± 2.179
0.0AspCys: 0.0 ± 0.0
9.756AspAsp: 9.756 ± 0.681
9.756AspGlu: 9.756 ± 4.131
1.626AspPhe: 1.626 ± 1.09
8.13AspGly: 8.13 ± 5.448
1.626AspHis: 1.626 ± 1.09
1.626AspIle: 1.626 ± 1.317
4.878AspLys: 4.878 ± 1.543
0.0AspLeu: 0.0 ± 0.0
1.626AspMet: 1.626 ± 1.09
3.252AspAsn: 3.252 ± 0.227
1.626AspPro: 1.626 ± 1.09
1.626AspGln: 1.626 ± 1.317
0.0AspArg: 0.0 ± 0.0
4.878AspSer: 4.878 ± 0.863
4.878AspThr: 4.878 ± 1.543
0.0AspVal: 0.0 ± 0.0
8.13AspTrp: 8.13 ± 3.042
4.878AspTyr: 4.878 ± 1.543
0.0AspXaa: 0.0 ± 0.0
Glu
1.626GluAla: 1.626 ± 1.317
0.0GluCys: 0.0 ± 0.0
1.626GluAsp: 1.626 ± 1.09
3.252GluGlu: 3.252 ± 2.179
4.878GluPhe: 4.878 ± 3.269
1.626GluGly: 1.626 ± 1.09
0.0GluHis: 0.0 ± 0.0
3.252GluIle: 3.252 ± 2.179
1.626GluLys: 1.626 ± 1.09
4.878GluLeu: 4.878 ± 3.269
1.626GluMet: 1.626 ± 0.785
3.252GluAsn: 3.252 ± 0.227
3.252GluPro: 3.252 ± 2.179
1.626GluGln: 1.626 ± 1.09
8.13GluArg: 8.13 ± 0.636
3.252GluSer: 3.252 ± 2.633
3.252GluThr: 3.252 ± 0.227
0.0GluVal: 0.0 ± 0.0
1.626GluTrp: 1.626 ± 1.09
1.626GluTyr: 1.626 ± 1.09
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.0PheCys: 0.0 ± 0.0
8.13PheAsp: 8.13 ± 5.448
3.252PheGlu: 3.252 ± 2.179
4.878PhePhe: 4.878 ± 0.863
3.252PheGly: 3.252 ± 0.227
0.0PheHis: 0.0 ± 0.0
1.626PheIle: 1.626 ± 1.09
1.626PheLys: 1.626 ± 1.09
0.0PheLeu: 0.0 ± 0.0
3.252PheMet: 3.252 ± 2.179
3.252PheAsn: 3.252 ± 2.633
1.626PhePro: 1.626 ± 1.317
1.626PheGln: 1.626 ± 1.09
3.252PheArg: 3.252 ± 0.227
4.878PheSer: 4.878 ± 0.863
3.252PheThr: 3.252 ± 2.633
1.626PheVal: 1.626 ± 1.317
1.626PheTrp: 1.626 ± 1.317
1.626PheTyr: 1.626 ± 1.09
0.0PheXaa: 0.0 ± 0.0
Gly
3.252GlyAla: 3.252 ± 0.227
3.252GlyCys: 3.252 ± 2.179
8.13GlyAsp: 8.13 ± 1.77
3.252GlyGlu: 3.252 ± 2.179
1.626GlyPhe: 1.626 ± 1.09
8.13GlyGly: 8.13 ± 0.636
1.626GlyHis: 1.626 ± 1.09
0.0GlyIle: 0.0 ± 0.0
8.13GlyLys: 8.13 ± 5.448
9.756GlyLeu: 9.756 ± 4.131
3.252GlyMet: 3.252 ± 2.633
4.878GlyAsn: 4.878 ± 1.543
0.0GlyPro: 0.0 ± 0.0
3.252GlyGln: 3.252 ± 0.227
3.252GlyArg: 3.252 ± 2.179
4.878GlySer: 4.878 ± 3.95
6.504GlyThr: 6.504 ± 1.952
1.626GlyVal: 1.626 ± 1.317
4.878GlyTrp: 4.878 ± 1.543
1.626GlyTyr: 1.626 ± 1.09
0.0GlyXaa: 0.0 ± 0.0
His
3.252HisAla: 3.252 ± 2.179
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.626HisGlu: 1.626 ± 1.317
1.626HisPhe: 1.626 ± 1.317
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.626HisLys: 1.626 ± 1.317
1.626HisLeu: 1.626 ± 1.09
0.0HisMet: 0.0 ± 0.0
1.626HisAsn: 1.626 ± 1.09
0.0HisPro: 0.0 ± 0.0
1.626HisGln: 1.626 ± 1.09
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
3.252HisTyr: 3.252 ± 2.179
0.0HisXaa: 0.0 ± 0.0
Ile
1.626IleAla: 1.626 ± 1.317
3.252IleCys: 3.252 ± 0.227
1.626IleAsp: 1.626 ± 1.317
1.626IleGlu: 1.626 ± 1.09
4.878IlePhe: 4.878 ± 3.269
4.878IleGly: 4.878 ± 3.269
0.0IleHis: 0.0 ± 0.0
4.878IleIle: 4.878 ± 1.543
0.0IleLys: 0.0 ± 0.0
4.878IleLeu: 4.878 ± 1.543
0.0IleMet: 0.0 ± 0.0
3.252IleAsn: 3.252 ± 0.227
1.626IlePro: 1.626 ± 1.09
1.626IleGln: 1.626 ± 1.317
1.626IleArg: 1.626 ± 1.09
1.626IleSer: 1.626 ± 1.317
1.626IleThr: 1.626 ± 1.317
1.626IleVal: 1.626 ± 1.09
0.0IleTrp: 0.0 ± 0.0
3.252IleTyr: 3.252 ± 2.633
0.0IleXaa: 0.0 ± 0.0
Lys
1.626LysAla: 1.626 ± 1.317
0.0LysCys: 0.0 ± 0.0
3.252LysAsp: 3.252 ± 2.179
3.252LysGlu: 3.252 ± 0.227
0.0LysPhe: 0.0 ± 0.0
6.504LysGly: 6.504 ± 1.952
1.626LysHis: 1.626 ± 1.09
4.878LysIle: 4.878 ± 0.863
1.626LysLys: 1.626 ± 1.317
1.626LysLeu: 1.626 ± 1.09
1.626LysMet: 1.626 ± 1.317
1.626LysAsn: 1.626 ± 1.317
4.878LysPro: 4.878 ± 3.269
1.626LysGln: 1.626 ± 1.317
1.626LysArg: 1.626 ± 1.09
3.252LysSer: 3.252 ± 0.227
3.252LysThr: 3.252 ± 0.227
1.626LysVal: 1.626 ± 1.317
1.626LysTrp: 1.626 ± 1.09
6.504LysTyr: 6.504 ± 1.952
0.0LysXaa: 0.0 ± 0.0
Leu
9.756LeuAla: 9.756 ± 1.725
1.626LeuCys: 1.626 ± 1.09
1.626LeuAsp: 1.626 ± 1.09
1.626LeuGlu: 1.626 ± 1.09
4.878LeuPhe: 4.878 ± 0.863
6.504LeuGly: 6.504 ± 4.358
3.252LeuHis: 3.252 ± 2.179
3.252LeuIle: 3.252 ± 0.227
6.504LeuLys: 6.504 ± 2.86
0.0LeuLeu: 0.0 ± 0.0
0.0LeuMet: 0.0 ± 0.0
3.252LeuAsn: 3.252 ± 0.227
3.252LeuPro: 3.252 ± 2.633
0.0LeuGln: 0.0 ± 0.0
3.252LeuArg: 3.252 ± 2.179
0.0LeuSer: 0.0 ± 0.0
4.878LeuThr: 4.878 ± 0.863
3.252LeuVal: 3.252 ± 0.227
1.626LeuTrp: 1.626 ± 1.09
1.626LeuTyr: 1.626 ± 1.317
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.626MetGlu: 1.626 ± 1.09
0.0MetPhe: 0.0 ± 0.0
1.626MetGly: 1.626 ± 1.317
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
4.878MetLeu: 4.878 ± 0.863
0.0MetMet: 0.0 ± 0.0
1.626MetAsn: 1.626 ± 1.317
4.878MetPro: 4.878 ± 1.543
0.0MetGln: 0.0 ± 0.0
3.252MetArg: 3.252 ± 2.633
0.0MetSer: 0.0 ± 0.0
1.626MetThr: 1.626 ± 1.317
4.878MetVal: 4.878 ± 0.863
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.252AsnAla: 3.252 ± 2.633
1.626AsnCys: 1.626 ± 1.09
3.252AsnAsp: 3.252 ± 2.179
1.626AsnGlu: 1.626 ± 1.317
4.878AsnPhe: 4.878 ± 1.543
3.252AsnGly: 3.252 ± 0.227
1.626AsnHis: 1.626 ± 1.09
4.878AsnIle: 4.878 ± 1.543
1.626AsnLys: 1.626 ± 1.09
4.878AsnLeu: 4.878 ± 1.543
0.0AsnMet: 0.0 ± 0.0
3.252AsnAsn: 3.252 ± 2.633
3.252AsnPro: 3.252 ± 0.227
1.626AsnGln: 1.626 ± 1.317
3.252AsnArg: 3.252 ± 0.227
3.252AsnSer: 3.252 ± 2.633
1.626AsnThr: 1.626 ± 1.317
6.504AsnVal: 6.504 ± 0.454
0.0AsnTrp: 0.0 ± 0.0
1.626AsnTyr: 1.626 ± 1.09
0.0AsnXaa: 0.0 ± 0.0
Pro
3.252ProAla: 3.252 ± 0.227
0.0ProCys: 0.0 ± 0.0
3.252ProAsp: 3.252 ± 2.179
1.626ProGlu: 1.626 ± 1.09
1.626ProPhe: 1.626 ± 1.09
1.626ProGly: 1.626 ± 1.09
1.626ProHis: 1.626 ± 1.09
1.626ProIle: 1.626 ± 1.09
1.626ProLys: 1.626 ± 1.09
0.0ProLeu: 0.0 ± 0.0
0.0ProMet: 0.0 ± 0.0
1.626ProAsn: 1.626 ± 1.09
0.0ProPro: 0.0 ± 0.0
1.626ProGln: 1.626 ± 1.317
4.878ProArg: 4.878 ± 0.863
3.252ProSer: 3.252 ± 0.227
1.626ProThr: 1.626 ± 1.09
3.252ProVal: 3.252 ± 0.227
4.878ProTrp: 4.878 ± 3.95
1.626ProTyr: 1.626 ± 1.09
0.0ProXaa: 0.0 ± 0.0
Gln
3.252GlnAla: 3.252 ± 2.633
1.626GlnCys: 1.626 ± 1.317
4.878GlnAsp: 4.878 ± 0.863
0.0GlnGlu: 0.0 ± 0.0
1.626GlnPhe: 1.626 ± 1.09
1.626GlnGly: 1.626 ± 1.317
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
0.0GlnLys: 0.0 ± 0.0
1.626GlnLeu: 1.626 ± 1.09
1.626GlnMet: 1.626 ± 1.317
0.0GlnAsn: 0.0 ± 0.0
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
0.0GlnArg: 0.0 ± 0.0
1.626GlnSer: 1.626 ± 1.317
1.626GlnThr: 1.626 ± 1.317
3.252GlnVal: 3.252 ± 2.633
1.626GlnTrp: 1.626 ± 1.317
4.878GlnTyr: 4.878 ± 0.863
0.0GlnXaa: 0.0 ± 0.0
Arg
4.878ArgAla: 4.878 ± 3.269
0.0ArgCys: 0.0 ± 0.0
6.504ArgAsp: 6.504 ± 0.454
4.878ArgGlu: 4.878 ± 3.269
0.0ArgPhe: 0.0 ± 0.0
8.13ArgGly: 8.13 ± 1.77
0.0ArgHis: 0.0 ± 0.0
4.878ArgIle: 4.878 ± 1.543
3.252ArgLys: 3.252 ± 2.633
4.878ArgLeu: 4.878 ± 3.269
0.0ArgMet: 0.0 ± 0.871
3.252ArgAsn: 3.252 ± 2.633
4.878ArgPro: 4.878 ± 3.269
3.252ArgGln: 3.252 ± 0.227
6.504ArgArg: 6.504 ± 0.454
4.878ArgSer: 4.878 ± 0.863
4.878ArgThr: 4.878 ± 1.543
9.756ArgVal: 9.756 ± 1.725
0.0ArgTrp: 0.0 ± 0.0
1.626ArgTyr: 1.626 ± 1.317
0.0ArgXaa: 0.0 ± 0.0
Ser
3.252SerAla: 3.252 ± 0.227
0.0SerCys: 0.0 ± 0.0
3.252SerAsp: 3.252 ± 2.633
0.0SerGlu: 0.0 ± 0.0
0.0SerPhe: 0.0 ± 0.0
4.878SerGly: 4.878 ± 1.543
0.0SerHis: 0.0 ± 0.0
1.626SerIle: 1.626 ± 1.09
1.626SerLys: 1.626 ± 1.09
4.878SerLeu: 4.878 ± 0.863
3.252SerMet: 3.252 ± 2.633
6.504SerAsn: 6.504 ± 0.454
1.626SerPro: 1.626 ± 1.317
1.626SerGln: 1.626 ± 1.317
8.13SerArg: 8.13 ± 6.583
9.756SerSer: 9.756 ± 3.087
9.756SerThr: 9.756 ± 3.087
3.252SerVal: 3.252 ± 0.227
0.0SerTrp: 0.0 ± 0.0
1.626SerTyr: 1.626 ± 1.317
0.0SerXaa: 0.0 ± 0.0
Thr
8.13ThrAla: 8.13 ± 4.176
0.0ThrCys: 0.0 ± 0.0
3.252ThrAsp: 3.252 ± 2.179
4.878ThrGlu: 4.878 ± 0.863
4.878ThrPhe: 4.878 ± 1.543
4.878ThrGly: 4.878 ± 3.95
0.0ThrHis: 0.0 ± 0.0
3.252ThrIle: 3.252 ± 0.227
1.626ThrLys: 1.626 ± 1.09
8.13ThrLeu: 8.13 ± 6.583
1.626ThrMet: 1.626 ± 1.317
3.252ThrAsn: 3.252 ± 2.633
0.0ThrPro: 0.0 ± 0.0
3.252ThrGln: 3.252 ± 2.633
6.504ThrArg: 6.504 ± 4.358
4.878ThrSer: 4.878 ± 3.95
0.0ThrThr: 0.0 ± 0.0
3.252ThrVal: 3.252 ± 2.179
0.0ThrTrp: 0.0 ± 0.0
3.252ThrTyr: 3.252 ± 0.227
0.0ThrXaa: 0.0 ± 0.0
Val
3.252ValAla: 3.252 ± 0.227
0.0ValCys: 0.0 ± 0.0
3.252ValAsp: 3.252 ± 0.227
3.252ValGlu: 3.252 ± 0.227
3.252ValPhe: 3.252 ± 2.633
6.504ValGly: 6.504 ± 0.454
0.0ValHis: 0.0 ± 0.0
1.626ValIle: 1.626 ± 1.317
3.252ValLys: 3.252 ± 2.179
4.878ValLeu: 4.878 ± 0.863
0.0ValMet: 0.0 ± 0.0
1.626ValAsn: 1.626 ± 1.09
4.878ValPro: 4.878 ± 0.863
3.252ValGln: 3.252 ± 0.227
6.504ValArg: 6.504 ± 0.454
6.504ValSer: 6.504 ± 5.266
0.0ValThr: 0.0 ± 0.0
1.626ValVal: 1.626 ± 1.317
1.626ValTrp: 1.626 ± 1.09
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
3.252TrpAla: 3.252 ± 0.227
1.626TrpCys: 1.626 ± 1.317
3.252TrpAsp: 3.252 ± 2.179
0.0TrpGlu: 0.0 ± 0.0
1.626TrpPhe: 1.626 ± 1.09
1.626TrpGly: 1.626 ± 1.09
3.252TrpHis: 3.252 ± 2.633
0.0TrpIle: 0.0 ± 0.0
3.252TrpLys: 3.252 ± 0.227
1.626TrpLeu: 1.626 ± 1.09
1.626TrpMet: 1.626 ± 1.09
1.626TrpAsn: 1.626 ± 1.09
0.0TrpPro: 0.0 ± 0.0
1.626TrpGln: 1.626 ± 1.317
3.252TrpArg: 3.252 ± 2.633
0.0TrpSer: 0.0 ± 0.0
1.626TrpThr: 1.626 ± 1.317
1.626TrpVal: 1.626 ± 1.09
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.252TyrAla: 3.252 ± 2.179
1.626TyrCys: 1.626 ± 1.09
3.252TyrAsp: 3.252 ± 2.633
3.252TyrGlu: 3.252 ± 2.179
1.626TyrPhe: 1.626 ± 1.09
0.0TyrGly: 0.0 ± 0.0
1.626TyrHis: 1.626 ± 1.317
3.252TyrIle: 3.252 ± 0.227
6.504TyrLys: 6.504 ± 1.952
0.0TyrLeu: 0.0 ± 0.0
1.626TyrMet: 1.626 ± 1.317
1.626TyrAsn: 1.626 ± 1.317
1.626TyrPro: 1.626 ± 1.09
0.0TyrGln: 0.0 ± 0.0
4.878TyrArg: 4.878 ± 0.863
3.252TyrSer: 3.252 ± 0.227
1.626TyrThr: 1.626 ± 1.09
4.878TyrVal: 4.878 ± 1.543
1.626TyrTrp: 1.626 ± 1.317
4.878TyrTyr: 4.878 ± 1.543
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (616 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski