New Jersey polyomavirus-2013

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus; Human polyomavirus 13

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A024B5E8|A0A024B5E8_9POLY Small T antigen OS=New Jersey polyomavirus-2013 OX=1497391 PE=4 SV=1
MM1 pKa = 7.52GGLLSSLVDD10 pKa = 4.08MIVMATEE17 pKa = 4.39LSAASGLTMEE27 pKa = 5.3ALLTGEE33 pKa = 4.6ALAALEE39 pKa = 4.41TEE41 pKa = 4.83VFSLMTVEE49 pKa = 4.22GLSGIEE55 pKa = 4.47ALAQLGWTAEE65 pKa = 4.19QFSNMAFISTTFSNAIGYY83 pKa = 8.57GVLFQTVSGISSLISAGIRR102 pKa = 11.84LGTSVSSVNRR112 pKa = 11.84HH113 pKa = 3.58QTEE116 pKa = 4.11QEE118 pKa = 3.9LEE120 pKa = 4.31TIFGKK125 pKa = 10.04IAHH128 pKa = 7.44LIHH131 pKa = 6.78VNLAFHH137 pKa = 7.1LNPFNWCEE145 pKa = 4.3SIGGTVPTEE154 pKa = 4.06FNFLSLDD161 pKa = 3.6QLSKK165 pKa = 11.01LGVVIEE171 pKa = 4.01NGRR174 pKa = 11.84WVIQTTPSFDD184 pKa = 3.41PMFEE188 pKa = 3.97SGILIEE194 pKa = 5.13RR195 pKa = 11.84YY196 pKa = 8.52EE197 pKa = 4.33PPGGAYY203 pKa = 9.28QRR205 pKa = 11.84ATPDD209 pKa = 2.54WMLPLILRR217 pKa = 11.84LNGASQEE224 pKa = 4.13KK225 pKa = 9.44TPVCPTKK232 pKa = 10.84

Molecular weight: 25.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A024B5E3|A0A024B5E3_9POLY Minor capsid protein VP2 OS=New Jersey polyomavirus-2013 OX=1497391 GN=VP2 PE=3 SV=1
MM1 pKa = 7.51EE2 pKa = 5.14KK3 pKa = 10.45VLEE6 pKa = 4.4KK7 pKa = 10.38SDD9 pKa = 4.07KK10 pKa = 10.99EE11 pKa = 3.97MLIEE15 pKa = 3.83LLGIPRR21 pKa = 11.84YY22 pKa = 10.05AYY24 pKa = 10.75GNFPIMKK31 pKa = 8.48TAYY34 pKa = 9.07KK35 pKa = 9.52RR36 pKa = 11.84ASKK39 pKa = 9.97IYY41 pKa = 10.0HH42 pKa = 6.58PDD44 pKa = 3.14KK45 pKa = 11.07GGSSEE50 pKa = 5.93KK51 pKa = 10.35MMLLNSLWQKK61 pKa = 9.68FQEE64 pKa = 4.35GLIEE68 pKa = 4.05VRR70 pKa = 11.84DD71 pKa = 3.94SEE73 pKa = 4.69VCQVSFSDD81 pKa = 5.25CYY83 pKa = 11.12DD84 pKa = 3.38SSLLKK89 pKa = 10.67CCSPKK94 pKa = 10.18VFHH97 pKa = 6.8EE98 pKa = 4.25LFLRR102 pKa = 11.84SPQCLLKK109 pKa = 11.02GPTSCSCITSCLYY122 pKa = 9.95NQHH125 pKa = 6.21RR126 pKa = 11.84QIKK129 pKa = 9.16LCGKK133 pKa = 9.4KK134 pKa = 10.02RR135 pKa = 11.84SFLIPMAAPTSEE147 pKa = 4.72RR148 pKa = 11.84DD149 pKa = 3.59MQAGAPQYY157 pKa = 11.37LPMKK161 pKa = 10.05SLTRR165 pKa = 11.84EE166 pKa = 3.64QIYY169 pKa = 8.24TVMSPPSPPPLMKK182 pKa = 10.47KK183 pKa = 8.82MKK185 pKa = 10.08PKK187 pKa = 10.63VQDD190 pKa = 3.42TTLSPLLPPQPLPPPLPPKK209 pKa = 9.99KK210 pKa = 9.74YY211 pKa = 8.83PRR213 pKa = 11.84RR214 pKa = 11.84SVSLNSPRR222 pKa = 11.84VRR224 pKa = 11.84LHH226 pKa = 6.91PEE228 pKa = 3.46ALLQEE233 pKa = 4.98EE234 pKa = 4.4IQRR237 pKa = 11.84LRR239 pKa = 11.84EE240 pKa = 3.95SLHH243 pKa = 4.73QRR245 pKa = 11.84EE246 pKa = 4.26EE247 pKa = 4.18EE248 pKa = 4.2VLKK251 pKa = 10.65IWMDD255 pKa = 4.58LILTRR260 pKa = 11.84KK261 pKa = 7.77QALRR265 pKa = 11.84AHH267 pKa = 6.16HH268 pKa = 5.66QNKK271 pKa = 9.12KK272 pKa = 9.87GKK274 pKa = 9.46VLIVLLICLLVCLILSVTLYY294 pKa = 10.97LAIKK298 pKa = 9.34QQ299 pKa = 3.69

Molecular weight: 34.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2101

183

711

350.2

39.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.807 ± 0.546

2.713 ± 0.667

4.046 ± 0.841

6.901 ± 0.248

4.522 ± 0.879

5.997 ± 0.935

1.904 ± 0.137

5.045 ± 0.651

6.901 ± 1.071

10.9 ± 0.932

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.999 ± 0.309

3.808 ± 0.542

6.711 ± 1.101

4.522 ± 0.245

3.76 ± 0.345

8.425 ± 0.767

5.474 ± 0.668

5.474 ± 0.403

1.285 ± 0.308

2.808 ± 0.348
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski