Rodentolepis nana (Dwarf tapeworm) (Hymenolepis nana)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda; Eucestoda; Cyclophyllidea; Hymenolepididae; Rodentolepis

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13592 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P7T2I2|A0A3P7T2I2_RODNA Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS7567 PE=4 SV=1
MM1 pKa = 7.54FGGTFSLPHH10 pKa = 5.95NFEE13 pKa = 3.88RR14 pKa = 11.84TAPIYY19 pKa = 10.79KK20 pKa = 10.24PGDD23 pKa = 3.42KK24 pKa = 10.38VLKK27 pKa = 9.76KK28 pKa = 10.39QEE30 pKa = 4.24LVAQSQADD38 pKa = 3.55SRR40 pKa = 11.84QQKK43 pKa = 9.0QAFFSNPQTEE53 pKa = 4.8LLCAMLEE60 pKa = 4.23LTNPNAVLLGQASYY74 pKa = 11.37NLSEE78 pKa = 4.33MANMLVEE85 pKa = 4.56RR86 pKa = 11.84GEE88 pKa = 4.54LDD90 pKa = 3.93EE91 pKa = 7.75DD92 pKa = 5.3DD93 pKa = 6.09DD94 pKa = 5.27NDD96 pKa = 4.12GCGVEE101 pKa = 4.29PSPAKK106 pKa = 10.2LARR109 pKa = 11.84VDD111 pKa = 4.2SNPEE115 pKa = 4.0EE116 pKa = 4.37INLDD120 pKa = 3.81DD121 pKa = 6.17LDD123 pKa = 4.67VDD125 pKa = 5.16DD126 pKa = 6.13EE127 pKa = 4.77EE128 pKa = 5.41EE129 pKa = 3.94NANNGGIVEE138 pKa = 4.61GYY140 pKa = 9.47EE141 pKa = 3.95PGVVPVNDD149 pKa = 2.89VDD151 pKa = 4.85YY152 pKa = 11.21NPQYY156 pKa = 11.09LAGCEE161 pKa = 4.01LPSASEE167 pKa = 4.28YY168 pKa = 10.09YY169 pKa = 10.1PEE171 pKa = 4.9GATVSAIEE179 pKa = 4.26VQYY182 pKa = 10.99SPNPIYY188 pKa = 10.42TSEE191 pKa = 4.04VSLTEE196 pKa = 4.03GNEE199 pKa = 4.01YY200 pKa = 10.81NPEE203 pKa = 4.09PLVKK207 pKa = 10.19NPEE210 pKa = 4.17VIDD213 pKa = 3.72IDD215 pKa = 4.71NLIDD219 pKa = 5.51DD220 pKa = 5.5DD221 pKa = 5.57DD222 pKa = 6.78DD223 pKa = 3.91EE224 pKa = 6.96ASADD228 pKa = 3.51NGPQEE233 pKa = 4.34EE234 pKa = 4.81YY235 pKa = 10.86EE236 pKa = 4.1PGGVKK241 pKa = 10.51LEE243 pKa = 4.15VSYY246 pKa = 11.26NPQPFIEE253 pKa = 4.76EE254 pKa = 4.35DD255 pKa = 3.58EE256 pKa = 4.5QPTKK260 pKa = 10.82QEE262 pKa = 4.54DD263 pKa = 3.18AGQDD267 pKa = 3.08EE268 pKa = 5.12GLTVV272 pKa = 3.33

Molecular weight: 29.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A158QGF1|A0A158QGF1_RODNA Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3 PE=3 SV=1
MM1 pKa = 7.2NLVRR5 pKa = 11.84RR6 pKa = 11.84NLVTLMRR13 pKa = 11.84RR14 pKa = 11.84IQMNLVTLMRR24 pKa = 11.84RR25 pKa = 11.84IQMNLVKK32 pKa = 10.48RR33 pKa = 11.84NLVTLMRR40 pKa = 11.84RR41 pKa = 11.84IQMNLVKK48 pKa = 10.48RR49 pKa = 11.84NLVTLMRR56 pKa = 11.84RR57 pKa = 11.84IQMNLVGRR65 pKa = 11.84IPTLMM70 pKa = 4.37

Molecular weight: 8.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13592

0

13592

5151847

29

8438

379.0

42.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.493 ± 0.019

2.026 ± 0.015

5.179 ± 0.017

6.359 ± 0.029

4.172 ± 0.016

5.499 ± 0.035

2.367 ± 0.009

5.645 ± 0.018

5.35 ± 0.021

9.557 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.174 ± 0.008

4.757 ± 0.015

5.621 ± 0.026

4.037 ± 0.018

5.811 ± 0.019

9.449 ± 0.031

5.717 ± 0.019

5.915 ± 0.017

1.043 ± 0.007

2.819 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski