Mycobacterium phage Dante

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 105 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1Y7C1|A0A0K1Y7C1_9CAUD Uncharacterized protein OS=Mycobacterium phage Dante OX=1698357 GN=SEA_DANTE_61 PE=4 SV=1
MM1 pKa = 7.98PDD3 pKa = 3.43SDD5 pKa = 5.65PIDD8 pKa = 3.45FTAAGEE14 pKa = 4.09AVAEE18 pKa = 4.15IFMDD22 pKa = 4.95GIRR25 pKa = 11.84AIIAQEE31 pKa = 3.5LDD33 pKa = 3.05ARR35 pKa = 11.84GVKK38 pKa = 10.45GPSTVVNNVVPYY50 pKa = 10.34SLPDD54 pKa = 3.59SQDD57 pKa = 3.03AQYY60 pKa = 10.67MEE62 pKa = 4.28ATYY65 pKa = 10.41EE66 pKa = 4.01ADD68 pKa = 3.24VV69 pKa = 3.7

Molecular weight: 7.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1Y7E7|A0A0K1Y7E7_9CAUD Uncharacterized protein OS=Mycobacterium phage Dante OX=1698357 GN=SEA_DANTE_86 PE=4 SV=1
MM1 pKa = 7.2TAVCEE6 pKa = 4.13QCGSDD11 pKa = 3.46FVRR14 pKa = 11.84PARR17 pKa = 11.84RR18 pKa = 11.84GRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84LTCSDD27 pKa = 3.1DD28 pKa = 3.82CKK30 pKa = 10.33RR31 pKa = 11.84ARR33 pKa = 11.84HH34 pKa = 5.98SRR36 pKa = 11.84LQLDD40 pKa = 3.03RR41 pKa = 11.84DD42 pKa = 3.14KK43 pKa = 10.95RR44 pKa = 11.84YY45 pKa = 10.28RR46 pKa = 11.84EE47 pKa = 3.71EE48 pKa = 4.6HH49 pKa = 5.38GAWRR53 pKa = 11.84EE54 pKa = 3.76KK55 pKa = 10.7HH56 pKa = 6.16RR57 pKa = 11.84MRR59 pKa = 11.84SYY61 pKa = 11.26PEE63 pKa = 3.73TCGVCGRR70 pKa = 11.84TFDD73 pKa = 4.93AKK75 pKa = 10.68RR76 pKa = 11.84KK77 pKa = 8.62GQALCSVEE85 pKa = 4.0CQFAVRR91 pKa = 11.84NRR93 pKa = 11.84AAHH96 pKa = 5.31EE97 pKa = 4.21ANRR100 pKa = 11.84QSSIQRR106 pKa = 11.84RR107 pKa = 11.84LPVLYY112 pKa = 9.92TGDD115 pKa = 3.4GVVRR119 pKa = 11.84ATHH122 pKa = 5.49RR123 pKa = 11.84TWTSGLCASCGEE135 pKa = 4.21WFVAGARR142 pKa = 11.84ARR144 pKa = 11.84YY145 pKa = 8.86CSKK148 pKa = 10.56RR149 pKa = 11.84CAQRR153 pKa = 11.84ARR155 pKa = 11.84SEE157 pKa = 3.79RR158 pKa = 11.84RR159 pKa = 11.84RR160 pKa = 11.84ARR162 pKa = 11.84EE163 pKa = 3.65AGATASSRR171 pKa = 11.84VRR173 pKa = 11.84RR174 pKa = 11.84RR175 pKa = 11.84EE176 pKa = 3.36IFEE179 pKa = 4.08RR180 pKa = 11.84DD181 pKa = 3.43GYY183 pKa = 10.65RR184 pKa = 11.84CHH186 pKa = 7.51LCGEE190 pKa = 4.52MTDD193 pKa = 3.86PTQQVPHH200 pKa = 6.77PRR202 pKa = 11.84APTIDD207 pKa = 3.28HH208 pKa = 6.26VLPLSRR214 pKa = 11.84GGSHH218 pKa = 6.57EE219 pKa = 4.08PANCRR224 pKa = 11.84CACFLCNSVKK234 pKa = 10.15SDD236 pKa = 3.2RR237 pKa = 11.84VGWSPRR243 pKa = 11.84RR244 pKa = 11.84MASS247 pKa = 2.91

Molecular weight: 28.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

105

0

105

19266

30

1180

183.5

20.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.729 ± 0.413

1.308 ± 0.166

6.535 ± 0.208

5.855 ± 0.268

2.979 ± 0.194

8.751 ± 0.509

2.403 ± 0.177

4.199 ± 0.232

3.312 ± 0.178

7.23 ± 0.219

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.247 ± 0.112

3.249 ± 0.155

6.203 ± 0.217

3.545 ± 0.169

7.132 ± 0.391

5.85 ± 0.24

6.488 ± 0.256

7.293 ± 0.282

2.242 ± 0.143

2.45 ± 0.143
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski