Escherichia phage LL11

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Vectrevirus; Escherichia virus LL11

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385IPI7|A0A385IPI7_9CAUD DNA-directed DNA polymerase OS=Escherichia phage LL11 OX=2315628 GN=CPT_LL11_018 PE=3 SV=1
MM1 pKa = 7.87DD2 pKa = 5.65RR3 pKa = 11.84LDD5 pKa = 3.28IVYY8 pKa = 10.48LFFTFFLALLMLACYY23 pKa = 10.59GSMRR27 pKa = 11.84LDD29 pKa = 3.32IPDD32 pKa = 3.71EE33 pKa = 4.29EE34 pKa = 4.51EE35 pKa = 5.35GYY37 pKa = 10.68DD38 pKa = 3.39

Molecular weight: 4.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385IQA0|A0A385IQA0_9CAUD DNA primase/helicase OS=Escherichia phage LL11 OX=2315628 GN=CPT_LL11_013 PE=4 SV=1
MM1 pKa = 7.45EE2 pKa = 4.63IWRR5 pKa = 11.84PIAGIPDD12 pKa = 3.65YY13 pKa = 9.98MVSSFGRR20 pKa = 11.84VRR22 pKa = 11.84SHH24 pKa = 6.46KK25 pKa = 9.75RR26 pKa = 11.84GKK28 pKa = 8.66VTILNPPHH36 pKa = 7.39DD37 pKa = 4.08KK38 pKa = 10.82GGYY41 pKa = 8.12RR42 pKa = 11.84NVVLRR47 pKa = 11.84ANGEE51 pKa = 4.05KK52 pKa = 10.03INRR55 pKa = 11.84KK56 pKa = 5.78VHH58 pKa = 5.99RR59 pKa = 11.84LVAEE63 pKa = 4.24AFLPNPRR70 pKa = 11.84GLPQVNHH77 pKa = 6.71KK78 pKa = 11.25DD79 pKa = 3.38EE80 pKa = 4.58VRR82 pKa = 11.84DD83 pKa = 3.82NNHH86 pKa = 5.13VSNLEE91 pKa = 4.01WCDD94 pKa = 3.09CAYY97 pKa = 10.99NVDD100 pKa = 3.7YY101 pKa = 10.99SQAATYY107 pKa = 10.63IVMCPKK113 pKa = 10.79GNILVVRR120 pKa = 11.84NVAKK124 pKa = 10.43FCRR127 pKa = 11.84EE128 pKa = 3.75NGLSSGSFTDD138 pKa = 3.32MLKK141 pKa = 10.59GRR143 pKa = 11.84RR144 pKa = 11.84KK145 pKa = 6.36QHH147 pKa = 5.17KK148 pKa = 9.51GYY150 pKa = 10.76RR151 pKa = 11.84LVV153 pKa = 3.34

Molecular weight: 17.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

13991

32

1267

254.4

28.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.206 ± 0.599

1.058 ± 0.168

5.954 ± 0.222

7.055 ± 0.351

3.574 ± 0.161

7.669 ± 0.387

2.13 ± 0.266

5.375 ± 0.212

6.504 ± 0.292

7.962 ± 0.216

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.909 ± 0.19

4.51 ± 0.229

3.402 ± 0.186

4.146 ± 0.269

5.425 ± 0.26

6.004 ± 0.367

5.346 ± 0.312

7.069 ± 0.293

1.329 ± 0.129

3.374 ± 0.216
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski