Thioflavicoccus mobilis 8321

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus; Thioflavicoccus mobilis

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3528 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L0GW24|L0GW24_9GAMM FeS assembly protein SufB OS=Thioflavicoccus mobilis 8321 OX=765912 GN=Thimo_2216 PE=3 SV=1
MM1 pKa = 7.43LPIILALCLFAGATQADD18 pKa = 3.88DD19 pKa = 5.06ALIQEE24 pKa = 4.74YY25 pKa = 10.49LSAPALPPASLTDD38 pKa = 3.46DD39 pKa = 3.63TVEE42 pKa = 4.12PEE44 pKa = 3.75VTIIEE49 pKa = 4.36RR50 pKa = 11.84GQDD53 pKa = 3.04VIYY56 pKa = 9.59EE57 pKa = 4.0YY58 pKa = 10.53RR59 pKa = 11.84VRR61 pKa = 11.84GQLYY65 pKa = 7.95MVKK68 pKa = 9.18VQPIAGPTYY77 pKa = 10.59YY78 pKa = 11.27LLDD81 pKa = 3.74TDD83 pKa = 5.35GDD85 pKa = 4.18GTLDD89 pKa = 3.58TRR91 pKa = 11.84DD92 pKa = 3.83DD93 pKa = 4.05RR94 pKa = 11.84PLNMATQQWLLFDD107 pKa = 3.89WW108 pKa = 4.61

Molecular weight: 12.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L0GT22|L0GT22_9GAMM Mg-chelatase subunit ChlD OS=Thioflavicoccus mobilis 8321 OX=765912 GN=Thimo_1115 PE=4 SV=1
MM1 pKa = 7.58SLPSSEE7 pKa = 4.11VRR9 pKa = 11.84SPSATAEE16 pKa = 4.06PPTADD21 pKa = 3.16RR22 pKa = 11.84SGRR25 pKa = 11.84AHH27 pKa = 5.93LRR29 pKa = 11.84EE30 pKa = 3.87RR31 pKa = 11.84AIRR34 pKa = 11.84WLIRR38 pKa = 11.84LIARR42 pKa = 11.84LPLAWIHH49 pKa = 6.45RR50 pKa = 11.84LGATLSQLIVWLPNRR65 pKa = 11.84QRR67 pKa = 11.84RR68 pKa = 11.84NALINIATCLPDD80 pKa = 4.25LSPTEE85 pKa = 4.17QVALRR90 pKa = 11.84NANLRR95 pKa = 11.84EE96 pKa = 3.86FGKK99 pKa = 9.04TYY101 pKa = 11.06LEE103 pKa = 5.0IGHH106 pKa = 7.1LWLRR110 pKa = 11.84PVDD113 pKa = 3.83EE114 pKa = 4.35VLGLIRR120 pKa = 11.84EE121 pKa = 4.27VRR123 pKa = 11.84GAEE126 pKa = 3.8LLRR129 pKa = 11.84RR130 pKa = 11.84HH131 pKa = 6.03GGKK134 pKa = 10.36GLIVLSPHH142 pKa = 5.56IGAWEE147 pKa = 3.66LAGLYY152 pKa = 10.48LSIQGPTAIFYY163 pKa = 10.47KK164 pKa = 8.66PQKK167 pKa = 10.32YY168 pKa = 10.43LDD170 pKa = 4.15DD171 pKa = 5.69LIVAARR177 pKa = 11.84RR178 pKa = 11.84RR179 pKa = 11.84GGARR183 pKa = 11.84LAPITAKK190 pKa = 10.6GIRR193 pKa = 11.84VLVQALEE200 pKa = 3.93RR201 pKa = 11.84GEE203 pKa = 4.07YY204 pKa = 10.42VGILPDD210 pKa = 4.57QEE212 pKa = 4.13PKK214 pKa = 9.25MDD216 pKa = 3.8KK217 pKa = 10.82GAVFAPFFGIPALTMLLVNRR237 pKa = 11.84LARR240 pKa = 11.84RR241 pKa = 11.84TGAPVIFMFAEE252 pKa = 4.27RR253 pKa = 11.84LPRR256 pKa = 11.84ARR258 pKa = 11.84GFRR261 pKa = 11.84IHH263 pKa = 7.07CLPAPDD269 pKa = 5.76GIDD272 pKa = 3.93SADD275 pKa = 3.6DD276 pKa = 3.67HH277 pKa = 6.15QAAAALNRR285 pKa = 11.84GIEE288 pKa = 4.02QCIGVCPAQFVWPYY302 pKa = 9.83KK303 pKa = 9.44RR304 pKa = 11.84FRR306 pKa = 11.84RR307 pKa = 11.84RR308 pKa = 11.84PEE310 pKa = 4.19GQPKK314 pKa = 10.53LYY316 pKa = 10.23TGPLDD321 pKa = 4.71DD322 pKa = 4.81AQTLARR328 pKa = 11.84LASDD332 pKa = 3.2QVGRR336 pKa = 11.84GTPTT340 pKa = 2.81

Molecular weight: 37.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3528

0

3528

1133450

28

2948

321.3

35.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.049 ± 0.045

1.022 ± 0.014

5.891 ± 0.029

6.316 ± 0.042

3.335 ± 0.025

8.328 ± 0.036

2.239 ± 0.019

4.714 ± 0.029

2.467 ± 0.029

11.358 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.015 ± 0.018

2.237 ± 0.021

5.467 ± 0.033

3.43 ± 0.024

8.338 ± 0.046

4.804 ± 0.032

4.948 ± 0.031

7.222 ± 0.036

1.435 ± 0.019

2.386 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski