Rodentibacter heylii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Rodentibacter

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1998 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V3K6K5|A0A1V3K6K5_9PAST Aminotransferase OS=Rodentibacter heylii OX=1906744 GN=BKG89_07455 PE=4 SV=1
MM1 pKa = 7.32YY2 pKa = 9.89IDD4 pKa = 3.75TSEE7 pKa = 4.48LCDD10 pKa = 3.39IYY12 pKa = 11.16ADD14 pKa = 3.4QVDD17 pKa = 4.16VVEE20 pKa = 5.55PIFSSFGGLTYY31 pKa = 9.96FYY33 pKa = 11.39GKK35 pKa = 8.46VTTVKK40 pKa = 10.34CFEE43 pKa = 4.59SNGLITEE50 pKa = 4.13VLEE53 pKa = 4.28EE54 pKa = 4.16NGEE57 pKa = 4.11GRR59 pKa = 11.84VLVIDD64 pKa = 3.74GGGAVRR70 pKa = 11.84RR71 pKa = 11.84ALIDD75 pKa = 3.65AEE77 pKa = 4.31LAQLAADD84 pKa = 4.38NGWEE88 pKa = 4.36GIIVYY93 pKa = 9.79GAVRR97 pKa = 11.84QIQQLEE103 pKa = 4.1NIEE106 pKa = 4.18IGIHH110 pKa = 5.7ALAPVPVRR118 pKa = 11.84ADD120 pKa = 3.34DD121 pKa = 3.97KK122 pKa = 11.82DD123 pKa = 3.75NGEE126 pKa = 4.09SDD128 pKa = 3.64VAVNFGGVTFFPEE141 pKa = 4.3DD142 pKa = 3.43YY143 pKa = 10.81VYY145 pKa = 11.59ADD147 pKa = 3.49LTGIILSQEE156 pKa = 4.06PLDD159 pKa = 5.19LEE161 pKa = 5.35DD162 pKa = 5.62FEE164 pKa = 5.6QEE166 pKa = 3.8

Molecular weight: 18.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V3K0Z1|A0A1V3K0Z1_9PAST Probable alpha-L-glutamate ligase OS=Rodentibacter heylii OX=1906744 GN=rimK PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84SRR14 pKa = 11.84THH16 pKa = 6.4GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1998

0

1998

647336

37

3037

324.0

36.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.759 ± 0.059

1.061 ± 0.019

4.722 ± 0.045

6.198 ± 0.05

4.531 ± 0.049

6.612 ± 0.057

2.032 ± 0.027

7.769 ± 0.049

6.15 ± 0.048

10.698 ± 0.075

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.333 ± 0.03

5.02 ± 0.052

3.702 ± 0.033

4.92 ± 0.054

4.49 ± 0.045

6.13 ± 0.036

5.188 ± 0.04

6.203 ± 0.045

1.159 ± 0.022

3.323 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski