Campylobacter sp. RM16192

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; unclassified Campylobacter

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1867 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G5R5D0|A0A6G5R5D0_9PROT SCP-like extracellular protein OS=Campylobacter sp. RM16192 OX=1660080 GN=CDOMC_1425 PE=4 SV=1
MM1 pKa = 7.28SVKK4 pKa = 9.21ITDD7 pKa = 3.16ICISCGSCIDD17 pKa = 3.71EE18 pKa = 4.91CPVEE22 pKa = 5.18AIVDD26 pKa = 3.85DD27 pKa = 4.11SDD29 pKa = 3.86NPTGEE34 pKa = 4.78DD35 pKa = 2.69IYY37 pKa = 11.57YY38 pKa = 10.43VYY40 pKa = 11.1ADD42 pKa = 3.78KK43 pKa = 11.13CVEE46 pKa = 4.3CVGHH50 pKa = 6.61NDD52 pKa = 3.28EE53 pKa = 4.91PACASACPTDD63 pKa = 4.43GCIVWDD69 pKa = 4.18MPYY72 pKa = 10.19EE73 pKa = 4.38GQPSRR78 pKa = 11.84SEE80 pKa = 3.53ISADD84 pKa = 3.2MRR86 pKa = 11.84KK87 pKa = 10.5GEE89 pKa = 4.21TAVIAA94 pKa = 4.29

Molecular weight: 10.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G5R3P7|A0A6G5R3P7_9PROT Uncharacterized protein OS=Campylobacter sp. RM16192 OX=1660080 GN=CDOMC_0881 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.06QPHH8 pKa = 5.76KK9 pKa = 7.92TPKK12 pKa = 9.96KK13 pKa = 7.46RR14 pKa = 11.84THH16 pKa = 6.5GFRR19 pKa = 11.84QRR21 pKa = 11.84MKK23 pKa = 9.24TKK25 pKa = 10.33NGRR28 pKa = 11.84KK29 pKa = 9.12IINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.98GRR39 pKa = 11.84RR40 pKa = 11.84ILAAA44 pKa = 4.16

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1867

0

1867

556605

37

2261

298.1

33.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.123 ± 0.058

1.073 ± 0.022

5.69 ± 0.047

6.935 ± 0.058

5.489 ± 0.053

6.17 ± 0.074

1.549 ± 0.027

8.862 ± 0.058

8.988 ± 0.068

9.457 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.478 ± 0.026

5.784 ± 0.05

2.798 ± 0.033

2.658 ± 0.031

3.648 ± 0.04

6.731 ± 0.048

4.373 ± 0.035

6.016 ± 0.056

0.668 ± 0.016

3.509 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski