Grapevine virus B
Average proteome isoelectric point is 7.19
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|Q96807|Q96807_9VIRU ORF2 protein OS=Grapevine virus B OX=35289 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.43 SISVSSQRR9 pKa = 11.84 VASAALYY16 pKa = 10.53 QNGSTDD22 pKa = 3.45 QIEE25 pKa = 4.49 EE26 pKa = 3.79 IKK28 pKa = 10.46 KK29 pKa = 9.7 IKK31 pKa = 10.14 SSRR34 pKa = 11.84 LLNSEE39 pKa = 3.93 KK40 pKa = 10.72 HH41 pKa = 5.85 SDD43 pKa = 3.45 GLFDD47 pKa = 3.39 YY48 pKa = 10.18 HH49 pKa = 8.73 VPDD52 pKa = 4.71 FLRR55 pKa = 11.84 DD56 pKa = 3.47 YY57 pKa = 9.64 FAKK60 pKa = 10.41 KK61 pKa = 9.79 GVHH64 pKa = 5.45 TSVHH68 pKa = 5.97 SFQAHH73 pKa = 5.6 PHH75 pKa = 6.42 PCSKK79 pKa = 10.22 MIEE82 pKa = 3.85 NHH84 pKa = 5.1 ILYY87 pKa = 10.15 NIVSQYY93 pKa = 11.14 VDD95 pKa = 3.88 DD96 pKa = 3.9 STLFVSCKK104 pKa = 8.4 EE105 pKa = 4.21 SKK107 pKa = 10.69 LRR109 pKa = 11.84 TLFMKK114 pKa = 10.5 RR115 pKa = 11.84 PKK117 pKa = 10.31 SLSNVTQYY125 pKa = 11.18 NRR127 pKa = 11.84 LVHH130 pKa = 6.67 AKK132 pKa = 10.22 DD133 pKa = 3.16 VLRR136 pKa = 11.84 YY137 pKa = 7.09 TDD139 pKa = 3.82 PVRR142 pKa = 11.84 EE143 pKa = 4.21 LDD145 pKa = 3.58 MEE147 pKa = 4.57 HH148 pKa = 6.7 LVKK151 pKa = 10.85 LSEE154 pKa = 3.89 LSKK157 pKa = 9.91 RR158 pKa = 11.84 AKK160 pKa = 9.21 TAFIHH165 pKa = 7.5 DD166 pKa = 4.11 EE167 pKa = 3.83 VHH169 pKa = 5.58 YY170 pKa = 10.38 WSLKK174 pKa = 10.06 DD175 pKa = 3.56 FQSFLGHH182 pKa = 7.21 LGGTQRR188 pKa = 11.84 LLYY191 pKa = 10.37 SVIYY195 pKa = 9.27 PAEE198 pKa = 3.75 LHH200 pKa = 6.78 IGFEE204 pKa = 4.01 QSLFPEE210 pKa = 4.94 AYY212 pKa = 9.72 EE213 pKa = 3.85 FDD215 pKa = 4.02 LLGEE219 pKa = 4.36 YY220 pKa = 8.29 ITWYY224 pKa = 9.9 PDD226 pKa = 2.72 GKK228 pKa = 10.96 ADD230 pKa = 4.06 GSYY233 pKa = 9.91 KK234 pKa = 10.57 QPVNPWLLTTSKK246 pKa = 9.62 TVDD249 pKa = 2.98 VHH251 pKa = 5.6 GQTWTLTKK259 pKa = 10.37 VLTMGAHH266 pKa = 6.43 HH267 pKa = 7.32 LFLATRR273 pKa = 11.84 GSTLTEE279 pKa = 3.89 EE280 pKa = 4.7 EE281 pKa = 4.19 YY282 pKa = 10.46 HH283 pKa = 6.86 YY284 pKa = 11.64 DD285 pKa = 3.81 DD286 pKa = 4.33 FTVILPKK293 pKa = 10.51 KK294 pKa = 9.03 LLQGRR299 pKa = 11.84 RR300 pKa = 11.84 RR301 pKa = 11.84 NKK303 pKa = 9.16 MPYY306 pKa = 9.24 LRR308 pKa = 11.84 SRR310 pKa = 11.84 FITSVLLYY318 pKa = 10.8 LLALKK323 pKa = 10.63 KK324 pKa = 9.81 PDD326 pKa = 3.96 PSSAVAKK333 pKa = 10.27 LRR335 pKa = 11.84 QLTNGEE341 pKa = 4.1 EE342 pKa = 4.3 STAEE346 pKa = 4.0 ALFVAQLSRR355 pKa = 11.84 QIQEE359 pKa = 3.74 TKK361 pKa = 10.63 LYY363 pKa = 10.92 DD364 pKa = 3.34 KK365 pKa = 10.54 MGNFSLKK372 pKa = 9.02 EE373 pKa = 4.34 CIWSAVSSAMGDD385 pKa = 3.43 SLVYY389 pKa = 10.47 FFDD392 pKa = 3.28 KK393 pKa = 10.94 ARR395 pKa = 11.84 FYY397 pKa = 11.44 NEE399 pKa = 3.89 SLEE402 pKa = 4.86 SFILNCGPAKK412 pKa = 10.33 IEE414 pKa = 3.87 IKK416 pKa = 10.18 RR417 pKa = 11.84 VYY419 pKa = 10.38 RR420 pKa = 11.84 DD421 pKa = 2.99 AVYY424 pKa = 10.43 RR425 pKa = 11.84 NQGVCPHH432 pKa = 6.5 LVSFDD437 pKa = 3.7 GSPDD441 pKa = 3.21 GVMDD445 pKa = 4.32 EE446 pKa = 6.01 LYY448 pKa = 10.21 LQHH451 pKa = 7.16 IRR453 pKa = 11.84 DD454 pKa = 4.07 MDD456 pKa = 4.05 RR457 pKa = 11.84 SSEE460 pKa = 4.21 PYY462 pKa = 9.83 SLTSAEE468 pKa = 4.17 VLEE471 pKa = 4.4 SSIGCRR477 pKa = 11.84 ISLIEE482 pKa = 4.41 MGRR485 pKa = 11.84 AMLKK489 pKa = 9.78 FHH491 pKa = 5.81 QQQDD495 pKa = 3.32 VMINEE500 pKa = 4.23 RR501 pKa = 11.84 VVLSPLDD508 pKa = 3.75 DD509 pKa = 3.63 FRR511 pKa = 11.84 SMRR514 pKa = 11.84 KK515 pKa = 9.55 ALTDD519 pKa = 3.32 RR520 pKa = 11.84 DD521 pKa = 4.48 GILGTTCLLLEE532 pKa = 4.27 WEE534 pKa = 4.33 YY535 pKa = 11.75 DD536 pKa = 3.43 PLKK539 pKa = 10.04 RR540 pKa = 11.84 YY541 pKa = 10.84 SMGLITATEE550 pKa = 4.06 LNAAIIGTTKK560 pKa = 9.14 ITAKK564 pKa = 10.65 KK565 pKa = 10.0 EE566 pKa = 3.83 MAKK569 pKa = 9.95 EE570 pKa = 3.75 CSEE573 pKa = 5.12 RR574 pKa = 11.84 YY575 pKa = 7.51 QQCSCGVRR583 pKa = 11.84 LPMRR587 pKa = 11.84 KK588 pKa = 9.58 LEE590 pKa = 4.33 TPLKK594 pKa = 10.47 VPTEE598 pKa = 4.15 EE599 pKa = 4.16 FTDD602 pKa = 3.55 ALKK605 pKa = 10.77 GRR607 pKa = 11.84 RR608 pKa = 11.84 AAFYY612 pKa = 10.78 SRR614 pKa = 11.84 HH615 pKa = 4.53 SWNYY619 pKa = 8.56 SYY621 pKa = 10.9 TGANHH626 pKa = 7.19 ASKK629 pKa = 10.41 GWPEE633 pKa = 3.91 WVSNIAEE640 pKa = 4.23 KK641 pKa = 10.9 LGLGEE646 pKa = 6.08 DD647 pKa = 4.29 FDD649 pKa = 4.9 HH650 pKa = 7.29 CLAQIYY656 pKa = 10.41 EE657 pKa = 4.13 EE658 pKa = 4.4 DD659 pKa = 3.5 KK660 pKa = 11.43 GINFNADD667 pKa = 3.58 DD668 pKa = 4.59 EE669 pKa = 4.66 PCYY672 pKa = 10.3 TDD674 pKa = 3.67 PEE676 pKa = 4.7 VVTVNLNGNANFHH689 pKa = 6.39 LKK691 pKa = 10.37 CGSEE695 pKa = 4.32 SVVPLSDD702 pKa = 3.5 GDD704 pKa = 3.98 VLIMPKK710 pKa = 10.34 GFQKK714 pKa = 7.9 THH716 pKa = 4.44 KK717 pKa = 9.66 HH718 pKa = 5.05 AVTGTSAGRR727 pKa = 11.84 ISLTFRR733 pKa = 11.84 NGINAPDD740 pKa = 3.79 EE741 pKa = 5.12 GSDD744 pKa = 3.38 KK745 pKa = 10.33 MSEE748 pKa = 4.08 YY749 pKa = 10.95 EE750 pKa = 3.83 EE751 pKa = 3.9 THH753 pKa = 7.01 RR754 pKa = 11.84 IGGKK758 pKa = 8.84 PGCPRR763 pKa = 11.84 EE764 pKa = 4.02 EE765 pKa = 4.08 QKK767 pKa = 11.21 EE768 pKa = 4.43 SVSLQILADD777 pKa = 3.61 HH778 pKa = 6.32 MRR780 pKa = 11.84 VDD782 pKa = 4.55 LAICTSMVFAKK793 pKa = 10.42 DD794 pKa = 3.0 PRR796 pKa = 11.84 ARR798 pKa = 11.84 EE799 pKa = 3.83 EE800 pKa = 4.07 VKK802 pKa = 10.67 RR803 pKa = 11.84 GGMTLGTFICVLKK816 pKa = 10.77 SLNLGAYY823 pKa = 8.83 IEE825 pKa = 4.37 SEE827 pKa = 4.12 RR828 pKa = 11.84 GCLYY832 pKa = 11.17 VNGAYY837 pKa = 9.51 KK838 pKa = 10.35 EE839 pKa = 4.08 LSCYY843 pKa = 10.93 AEE845 pKa = 5.14 DD846 pKa = 3.81 DD847 pKa = 5.21 HH848 pKa = 9.14 ISEE851 pKa = 4.07 WSGPRR856 pKa = 11.84 KK857 pKa = 8.21 EE858 pKa = 4.55 TTFSNALSMNPDD870 pKa = 2.73 IRR872 pKa = 11.84 VVKK875 pKa = 10.84 YY876 pKa = 7.31 EE877 pKa = 3.87 VCEE880 pKa = 3.89 QRR882 pKa = 11.84 AKK884 pKa = 11.0 KK885 pKa = 10.44 LVDD888 pKa = 3.38 SFQEE892 pKa = 4.38 GFTGVCLNKK901 pKa = 9.89 FQKK904 pKa = 10.24 QKK906 pKa = 11.29 SSFNLVNGKK915 pKa = 7.85 EE916 pKa = 4.28 LIDD919 pKa = 3.51 VHH921 pKa = 6.04 LTLGFAGSGKK931 pKa = 10.07 SFYY934 pKa = 9.33 PQCVLKK940 pKa = 10.75 NSHH943 pKa = 5.98 YY944 pKa = 10.96 ANSLVIVPRR953 pKa = 11.84 KK954 pKa = 9.5 ALCSDD959 pKa = 3.97 WSNKK963 pKa = 6.89 VHH965 pKa = 7.24 PDD967 pKa = 3.14 VKK969 pKa = 10.96 VVTFEE974 pKa = 4.36 SAFRR978 pKa = 11.84 QQKK981 pKa = 9.67 KK982 pKa = 10.22 GYY984 pKa = 8.32 GLIVIDD990 pKa = 5.52 EE991 pKa = 4.55 IGLLPPGYY999 pKa = 7.96 IDD1001 pKa = 3.39 MVHH1004 pKa = 7.07 GYY1006 pKa = 9.65 FCYY1009 pKa = 10.44 DD1010 pKa = 3.11 SLLVLGDD1017 pKa = 3.98 PLQCEE1022 pKa = 4.41 YY1023 pKa = 10.86 HH1024 pKa = 6.72 SKK1026 pKa = 10.93 ADD1028 pKa = 3.65 HH1029 pKa = 6.44 FFLGQEE1035 pKa = 3.67 EE1036 pKa = 5.32 SVFKK1040 pKa = 10.8 KK1041 pKa = 10.76 FKK1043 pKa = 9.78 GHH1045 pKa = 6.74 CNYY1048 pKa = 10.37 LYY1050 pKa = 10.44 KK1051 pKa = 10.26 SHH1053 pKa = 7.37 RR1054 pKa = 11.84 LPRR1057 pKa = 11.84 NQKK1060 pKa = 10.04 LFEE1063 pKa = 4.26 IEE1065 pKa = 3.74 CDD1067 pKa = 3.48 GAEE1070 pKa = 4.31 GEE1072 pKa = 4.57 GVTFNKK1078 pKa = 9.48 PRR1080 pKa = 11.84 AKK1082 pKa = 10.53 DD1083 pKa = 3.46 LTLCASQRR1091 pKa = 11.84 RR1092 pKa = 11.84 KK1093 pKa = 10.7 DD1094 pKa = 3.61 SEE1096 pKa = 4.15 KK1097 pKa = 10.97 DD1098 pKa = 3.41 VNTVGEE1104 pKa = 4.39 SQGLSANRR1112 pKa = 11.84 VNILLDD1118 pKa = 3.98 KK1119 pKa = 10.79 DD1120 pKa = 3.2 WSLVNDD1126 pKa = 3.55 EE1127 pKa = 4.41 TVIVAFTRR1135 pKa = 11.84 ARR1137 pKa = 11.84 KK1138 pKa = 9.07 EE1139 pKa = 3.48 INIIGDD1145 pKa = 3.34 ASLVNNLKK1153 pKa = 10.41 RR1154 pKa = 11.84 SAKK1157 pKa = 8.99 STVLKK1162 pKa = 10.48 KK1163 pKa = 10.3 ILGGEE1168 pKa = 4.09 RR1169 pKa = 11.84 VTEE1172 pKa = 3.98 GLILSLIRR1180 pKa = 11.84 KK1181 pKa = 8.22 KK1182 pKa = 10.97 LPDD1185 pKa = 4.17 VIWLRR1190 pKa = 11.84 RR1191 pKa = 11.84 RR1192 pKa = 11.84 CCSGQSDD1199 pKa = 3.77 EE1200 pKa = 4.69 MEE1202 pKa = 4.49 EE1203 pKa = 4.18 KK1204 pKa = 10.94 LSGDD1208 pKa = 3.83 PYY1210 pKa = 11.39 LKK1212 pKa = 10.88 GLLCLIDD1219 pKa = 3.51 EE1220 pKa = 4.66 TEE1222 pKa = 4.17 EE1223 pKa = 4.28 EE1224 pKa = 4.33 EE1225 pKa = 4.73 VEE1227 pKa = 4.15 IPEE1230 pKa = 4.55 PEE1232 pKa = 4.06 LLEE1235 pKa = 4.12 PQKK1238 pKa = 9.45 THH1240 pKa = 7.15 LPLCVGEE1247 pKa = 4.52 NEE1249 pKa = 5.08 LSISDD1254 pKa = 3.95 LRR1256 pKa = 11.84 SKK1258 pKa = 10.64 EE1259 pKa = 3.85 SRR1261 pKa = 11.84 EE1262 pKa = 3.85 VSTEE1266 pKa = 3.45 AGRR1269 pKa = 11.84 TDD1271 pKa = 3.59 QIDD1274 pKa = 3.44 EE1275 pKa = 4.49 LGYY1278 pKa = 10.63 KK1279 pKa = 10.28 GEE1281 pKa = 4.68 PEE1283 pKa = 3.71 NPMNHH1288 pKa = 6.53 KK1289 pKa = 10.28 ALYY1292 pKa = 9.9 LYY1294 pKa = 9.72 HH1295 pKa = 6.57 QNSDD1299 pKa = 2.99 VATFFLSIRR1308 pKa = 11.84 KK1309 pKa = 9.06 RR1310 pKa = 11.84 LRR1312 pKa = 11.84 FRR1314 pKa = 11.84 DD1315 pKa = 3.6 PEE1317 pKa = 3.93 KK1318 pKa = 10.88 NRR1320 pKa = 11.84 RR1321 pKa = 11.84 KK1322 pKa = 9.71 FNKK1325 pKa = 9.68 CKK1327 pKa = 10.63 GFGAQMFGVMKK1338 pKa = 10.29 SVYY1341 pKa = 9.45 NLKK1344 pKa = 10.34 QPDD1347 pKa = 4.27 HH1348 pKa = 6.81 LPLLEE1353 pKa = 4.38 RR1354 pKa = 11.84 AEE1356 pKa = 3.84 QDD1358 pKa = 3.38 FMKK1361 pKa = 10.65 KK1362 pKa = 10.44 RR1363 pKa = 11.84 IAKK1366 pKa = 8.86 SAKK1369 pKa = 9.83 LIEE1372 pKa = 4.11 KK1373 pKa = 9.78 HH1374 pKa = 5.98 SYY1376 pKa = 9.79 RR1377 pKa = 11.84 SEE1379 pKa = 4.17 PDD1381 pKa = 2.73 WPSNYY1386 pKa = 10.24 LKK1388 pKa = 10.49 IFLKK1392 pKa = 8.72 QQRR1395 pKa = 11.84 CTKK1398 pKa = 8.73 MEE1400 pKa = 3.88 KK1401 pKa = 10.21 RR1402 pKa = 11.84 KK1403 pKa = 10.1 VDD1405 pKa = 3.43 AKK1407 pKa = 10.73 AGQTIACFCHH1417 pKa = 6.52 AVLCRR1422 pKa = 11.84 FGPLLRR1428 pKa = 11.84 QTEE1431 pKa = 4.18 KK1432 pKa = 11.27 ALRR1435 pKa = 11.84 DD1436 pKa = 3.53 QLGPNVMIYY1445 pKa = 8.44 SQKK1448 pKa = 11.09 NYY1450 pKa = 9.71 TDD1452 pKa = 3.61 LDD1454 pKa = 3.62 KK1455 pKa = 10.0 WCKK1458 pKa = 10.53 GFVHH1462 pKa = 6.45 TLDD1465 pKa = 4.37 GTDD1468 pKa = 3.13 SDD1470 pKa = 4.89 YY1471 pKa = 11.67 EE1472 pKa = 4.18 AFDD1475 pKa = 3.69 RR1476 pKa = 11.84 SQDD1479 pKa = 3.49 EE1480 pKa = 4.13 KK1481 pKa = 11.74 VLDD1484 pKa = 4.02 FEE1486 pKa = 5.46 VNVLKK1491 pKa = 10.84 FFLWPEE1497 pKa = 3.97 EE1498 pKa = 4.02 MIEE1501 pKa = 4.23 EE1502 pKa = 4.47 YY1503 pKa = 9.75 VTLKK1507 pKa = 11.29 LMMGCSMGSLAVMRR1521 pKa = 11.84 FSGEE1525 pKa = 3.47 FGTFFFNTICNMGFTCLKK1543 pKa = 9.36 YY1544 pKa = 10.5 SIRR1547 pKa = 11.84 ADD1549 pKa = 3.67 TPICYY1554 pKa = 10.17 AGDD1557 pKa = 3.58 DD1558 pKa = 3.89 MYY1560 pKa = 11.84 APGILVTKK1568 pKa = 10.51 SEE1570 pKa = 4.52 FKK1572 pKa = 10.79 HH1573 pKa = 7.52 ILDD1576 pKa = 4.05 EE1577 pKa = 4.57 LQLKK1581 pKa = 10.55 AKK1583 pKa = 10.22 VNYY1586 pKa = 7.98 TRR1588 pKa = 11.84 SPLFCGWRR1596 pKa = 11.84 MSPYY1600 pKa = 10.58 GIVKK1604 pKa = 10.22 DD1605 pKa = 4.13 PNLLLDD1611 pKa = 3.33 RR1612 pKa = 11.84 WKK1614 pKa = 10.39 IAEE1617 pKa = 4.24 RR1618 pKa = 11.84 DD1619 pKa = 3.74 GSLKK1623 pKa = 10.86 NCMVNYY1629 pKa = 10.0 ALEE1632 pKa = 4.77 AIYY1635 pKa = 9.76 GYY1637 pKa = 10.94 RR1638 pKa = 11.84 LGEE1641 pKa = 4.09 HH1642 pKa = 6.86 LFDD1645 pKa = 5.7 LNVDD1649 pKa = 3.27 IDD1651 pKa = 3.95 AQQDD1655 pKa = 4.18 LIRR1658 pKa = 11.84 RR1659 pKa = 11.84 IVLIKK1664 pKa = 10.59 HH1665 pKa = 6.8 LLPQSLQRR1673 pKa = 11.84 FYY1675 pKa = 11.45 SDD1677 pKa = 3.46 EE1678 pKa = 3.95 EE1679 pKa = 4.4 RR1680 pKa = 11.84 EE1681 pKa = 4.3 CFSDD1685 pKa = 4.77 GEE1687 pKa = 4.26 EE1688 pKa = 4.21 FNLKK1692 pKa = 9.12 VRR1694 pKa = 11.84 NEE1696 pKa = 4.03 GGLDD1700 pKa = 3.13 EE1701 pKa = 5.86 SEE1703 pKa = 4.5 FAEE1706 pKa = 4.59 EE1707 pKa = 3.92
Molecular weight: 194.84 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 6.09
IPC2_protein 6.135
IPC_protein 6.186
Toseland 6.415
ProMoST 6.561
Dawson 6.532
Bjellqvist 6.547
Wikipedia 6.532
Rodwell 6.517
Grimsley 6.517
Solomon 6.532
Lehninger 6.532
Nozaki 6.825
DTASelect 6.971
Thurlkill 7.0
EMBOSS 6.956
Sillero 6.927
Patrickios 4.164
IPC_peptide 6.547
IPC2_peptide 6.751
IPC2.peptide.svr19 6.757
Protein with the highest isoelectric point:
>tr|Q96810|Q96810_9VIRU Putative RNA binding protein OS=Grapevine virus B OX=35289 GN=ORF5 PE=4 SV=1
MM1 pKa = 7.51 SKK3 pKa = 10.74 YY4 pKa = 10.44 LGEE7 pKa = 4.21 SRR9 pKa = 11.84 SAAKK13 pKa = 10.07 RR14 pKa = 11.84 RR15 pKa = 11.84 ATRR18 pKa = 11.84 YY19 pKa = 8.6 GRR21 pKa = 11.84 CYY23 pKa = 9.02 CCGRR27 pKa = 11.84 VEE29 pKa = 4.27 CNKK32 pKa = 10.41 GEE34 pKa = 4.12 RR35 pKa = 11.84 TTRR38 pKa = 11.84 SQDD41 pKa = 3.17 EE42 pKa = 4.28 VKK44 pKa = 10.72 EE45 pKa = 4.44 CIRR48 pKa = 11.84 TPAIRR53 pKa = 11.84 FLTEE57 pKa = 3.14 NGGRR61 pKa = 11.84 YY62 pKa = 5.83 VTNAISLALGDD73 pKa = 4.05 MEE75 pKa = 6.17 RR76 pKa = 11.84 IGKK79 pKa = 8.87 PEE81 pKa = 3.81 YY82 pKa = 10.18 QSLFRR87 pKa = 11.84 QNKK90 pKa = 8.15 APAGMRR96 pKa = 11.84 SPEE99 pKa = 4.07 EE100 pKa = 3.72 TPEE103 pKa = 4.1 FYY105 pKa = 11.07 NWGTDD110 pKa = 3.62 FNAGSSVFADD120 pKa = 3.46 RR121 pKa = 11.84 PYY123 pKa = 11.57
Molecular weight: 13.98 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 8.634
IPC2_protein 8.448
IPC_protein 8.492
Toseland 8.58
ProMoST 8.96
Dawson 9.077
Bjellqvist 9.224
Wikipedia 9.151
Rodwell 9.107
Grimsley 8.565
Solomon 9.253
Lehninger 9.224
Nozaki 9.341
DTASelect 9.019
Thurlkill 9.063
EMBOSS 9.224
Sillero 9.311
Patrickios 4.418
IPC_peptide 9.238
IPC2_peptide 8.404
IPC2.peptide.svr19 8.072
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
5
0
5
2528
123
1707
505.6
57.48
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
5.498 ± 0.805
2.571 ± 0.32
5.301 ± 1.054
7.714 ± 0.257
4.549 ± 0.167
6.487 ± 0.511
2.255 ± 0.717
4.668 ± 0.308
6.962 ± 0.994
9.81 ± 1.226
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.413 ± 0.389
3.758 ± 0.726
3.956 ± 0.498
4.035 ± 0.9
6.092 ± 1.128
7.793 ± 0.271
4.786 ± 0.516
6.408 ± 0.912
0.87 ± 0.247
4.074 ± 0.39
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here