Streptococcus satellite phage Javan302

Taxonomy: Viruses; unclassified bacterial viruses

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D5ZJW9|A0A4D5ZJW9_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan302 OX=2558622 GN=JavanS302_0006 PE=4 SV=1
MM1 pKa = 7.34TLDD4 pKa = 4.82LDD6 pKa = 4.12NMTQAEE12 pKa = 4.39FDD14 pKa = 3.59EE15 pKa = 4.86VMAEE19 pKa = 4.01IKK21 pKa = 10.22EE22 pKa = 4.0KK23 pKa = 10.73RR24 pKa = 11.84PNLFQFIADD33 pKa = 3.79FVDD36 pKa = 3.81RR37 pKa = 11.84KK38 pKa = 10.81VSTEE42 pKa = 3.88EE43 pKa = 3.34VDD45 pKa = 4.23EE46 pKa = 4.09YY47 pKa = 11.74LKK49 pKa = 10.4MKK51 pKa = 10.42HH52 pKa = 5.45EE53 pKa = 4.23KK54 pKa = 9.64QVEE57 pKa = 4.72FIKK60 pKa = 10.72NYY62 pKa = 6.92QARR65 pKa = 11.84AA66 pKa = 3.37

Molecular weight: 7.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D5ZNQ8|A0A4D5ZNQ8_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan302 OX=2558622 GN=JavanS302_0012 PE=4 SV=1
MM1 pKa = 7.56FDD3 pKa = 4.24SFPEE7 pKa = 3.89RR8 pKa = 11.84PKK10 pKa = 10.37YY11 pKa = 9.41MKK13 pKa = 9.51RR14 pKa = 11.84DD15 pKa = 3.77RR16 pKa = 11.84YY17 pKa = 9.18HH18 pKa = 5.94KK19 pKa = 10.09HH20 pKa = 4.58YY21 pKa = 11.02KK22 pKa = 10.26KK23 pKa = 10.36FLKK26 pKa = 8.87YY27 pKa = 8.46TKK29 pKa = 10.33KK30 pKa = 10.73GDD32 pKa = 3.84RR33 pKa = 11.84FWLNGLGSLRR43 pKa = 3.91

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17

0

17

2613

43

492

153.7

17.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.626 ± 0.279

0.574 ± 0.126

5.358 ± 0.47

8.726 ± 0.764

4.325 ± 0.412

5.281 ± 0.34

2.028 ± 0.319

6.582 ± 0.592

9.568 ± 0.578

9.529 ± 0.527

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.717 ± 0.356

5.281 ± 0.632

3.559 ± 0.765

3.789 ± 0.436

5.281 ± 0.486

5.166 ± 0.514

6.315 ± 0.246

5.281 ± 0.391

0.804 ± 0.237

4.21 ± 0.508
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski