Chelatococcus sp. CO-6

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Chelatococcaceae; Chelatococcus; unclassified Chelatococcus

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4557 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K2DBJ6|A0A0K2DBJ6_9RHIZ CoA-transferase OS=Chelatococcus sp. CO-6 OX=1702325 GN=AL346_08080 PE=4 SV=1
MM1 pKa = 7.47TYY3 pKa = 10.72VVTDD7 pKa = 3.39GCIRR11 pKa = 11.84CKK13 pKa = 10.79YY14 pKa = 7.94QDD16 pKa = 3.96CVEE19 pKa = 4.24VCPVDD24 pKa = 3.66CFYY27 pKa = 11.22EE28 pKa = 4.96GEE30 pKa = 4.4TMLVIHH36 pKa = 7.35PDD38 pKa = 3.09EE39 pKa = 5.88CIDD42 pKa = 4.44CGVCEE47 pKa = 4.63PEE49 pKa = 4.77CPADD53 pKa = 4.81AIVSDD58 pKa = 3.98TDD60 pKa = 3.28PRR62 pKa = 11.84ADD64 pKa = 2.86RR65 pKa = 11.84WLPVNAKK72 pKa = 9.72YY73 pKa = 10.3AAIWPNITDD82 pKa = 4.11KK83 pKa = 11.63GPVPDD88 pKa = 6.09DD89 pKa = 3.57ADD91 pKa = 3.19AWKK94 pKa = 10.46DD95 pKa = 3.66VPDD98 pKa = 3.68KK99 pKa = 11.31EE100 pKa = 4.63KK101 pKa = 10.89FLFSTEE107 pKa = 3.79KK108 pKa = 9.65MM109 pKa = 3.71

Molecular weight: 12.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K2DBS7|A0A0K2DBS7_9RHIZ Uncharacterized protein OS=Chelatococcus sp. CO-6 OX=1702325 GN=AL346_08655 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.38GGRR28 pKa = 11.84KK29 pKa = 9.28VIASRR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4557

0

4557

1442732

29

4510

316.6

34.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.917 ± 0.057

0.789 ± 0.011

5.437 ± 0.03

5.828 ± 0.031

3.712 ± 0.022

8.968 ± 0.034

1.957 ± 0.016

4.846 ± 0.03

2.677 ± 0.03

10.529 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.358 ± 0.017

2.151 ± 0.018

5.352 ± 0.029

2.658 ± 0.021

7.781 ± 0.039

4.666 ± 0.024

5.021 ± 0.023

8.006 ± 0.031

1.265 ± 0.013

2.084 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski