Nariva virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Narmovirus; Nariva narmovirus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B8XH61|B8XH61_9MONO Isoform of B8XH59 C protein OS=Nariva virus OX=590647 GN=P/V/C PE=4 SV=1
MM1 pKa = 6.91EE2 pKa = 4.72TNGQKK7 pKa = 10.37VIRR10 pKa = 11.84DD11 pKa = 3.98ALQVLAVVKK20 pKa = 9.18EE21 pKa = 4.31TDD23 pKa = 3.28SPTTEE28 pKa = 4.11NQCGRR33 pKa = 11.84RR34 pKa = 11.84LSVQGVTTQTSTTDD48 pKa = 3.42PEE50 pKa = 4.66TKK52 pKa = 10.41GEE54 pKa = 4.16SGSEE58 pKa = 4.12EE59 pKa = 3.92EE60 pKa = 5.62SGSGWGGEE68 pKa = 4.3GNSSQEE74 pKa = 3.96ASGSNQLVDD83 pKa = 3.04NAEE86 pKa = 4.12RR87 pKa = 11.84YY88 pKa = 10.31GEE90 pKa = 4.46GEE92 pKa = 4.1SKK94 pKa = 10.84GPQGPGGFDD103 pKa = 3.39GVHH106 pKa = 7.13DD107 pKa = 4.02SPVRR111 pKa = 11.84QDD113 pKa = 4.23HH114 pKa = 6.68PDD116 pKa = 3.0EE117 pKa = 4.96GIRR120 pKa = 11.84RR121 pKa = 11.84EE122 pKa = 3.98PCYY125 pKa = 10.92VLLGAASGGAYY136 pKa = 10.21LSEE139 pKa = 4.56SEE141 pKa = 5.11GEE143 pKa = 4.21GSPTRR148 pKa = 11.84GSPVGEE154 pKa = 4.17SGDD157 pKa = 3.66AKK159 pKa = 10.91VIAPPNRR166 pKa = 11.84GSTINDD172 pKa = 3.34NPSCDD177 pKa = 3.77DD178 pKa = 3.51VKK180 pKa = 11.13EE181 pKa = 4.14SLGFISQPKK190 pKa = 8.34PRR192 pKa = 11.84RR193 pKa = 11.84LTGIDD198 pKa = 3.15TSTDD202 pKa = 2.94TGTPIPPPRR211 pKa = 11.84DD212 pKa = 3.33YY213 pKa = 10.88TKK215 pKa = 9.98RR216 pKa = 11.84GHH218 pKa = 5.71RR219 pKa = 11.84RR220 pKa = 11.84EE221 pKa = 4.26YY222 pKa = 10.64SLTWTDD228 pKa = 3.37CGFLVEE234 pKa = 4.63SWCNPVCARR243 pKa = 11.84VTPLPRR249 pKa = 11.84RR250 pKa = 11.84EE251 pKa = 3.88SCKK254 pKa = 10.38CGKK257 pKa = 10.43CPVFCPEE264 pKa = 4.07CVGPGVSQEE273 pKa = 5.06DD274 pKa = 4.41IYY276 pKa = 11.86NDD278 pKa = 3.29

Molecular weight: 29.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B8XH61|B8XH61_9MONO Isoform of B8XH59 C protein OS=Nariva virus OX=590647 GN=P/V/C PE=4 SV=1
MM1 pKa = 8.09PSRR4 pKa = 11.84FLQSLRR10 pKa = 11.84KK11 pKa = 8.48LTLRR15 pKa = 11.84RR16 pKa = 11.84QRR18 pKa = 11.84TNAEE22 pKa = 3.72EE23 pKa = 4.52DD24 pKa = 3.65SQSRR28 pKa = 11.84EE29 pKa = 4.17SPPRR33 pKa = 11.84PPPRR37 pKa = 11.84TPRR40 pKa = 11.84PRR42 pKa = 11.84VRR44 pKa = 11.84VGVRR48 pKa = 11.84KK49 pKa = 10.11NPDD52 pKa = 2.93LVGVEE57 pKa = 4.93KK58 pKa = 9.73EE59 pKa = 4.19TQARR63 pKa = 11.84KK64 pKa = 8.44QAEE67 pKa = 4.73AINLLTMLRR76 pKa = 11.84DD77 pKa = 3.6MEE79 pKa = 4.37RR80 pKa = 11.84EE81 pKa = 3.71NLRR84 pKa = 11.84GLRR87 pKa = 11.84GLEE90 pKa = 3.76GLTEE94 pKa = 4.05YY95 pKa = 8.12TTVQFVKK102 pKa = 9.61TILMRR107 pKa = 11.84VSEE110 pKa = 4.45GSPVTSCWVQQVEE123 pKa = 4.1EE124 pKa = 5.36HH125 pKa = 6.33ICQSQRR131 pKa = 11.84EE132 pKa = 4.23KK133 pKa = 10.94EE134 pKa = 4.19ALHH137 pKa = 6.7EE138 pKa = 4.1AVQWVRR144 pKa = 11.84AVMQKK149 pKa = 10.74

Molecular weight: 17.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

2

8

5226

149

2201

653.3

72.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.487 ± 0.542

1.933 ± 0.25

5.549 ± 0.317

5.434 ± 0.481

2.832 ± 0.401

6.525 ± 0.779

2.354 ± 0.479

7.08 ± 0.795

4.363 ± 0.26

9.127 ± 0.656

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.698 ± 0.354

4.497 ± 0.259

5.683 ± 0.612

4.286 ± 0.484

6.008 ± 0.317

7.597 ± 0.515

6.142 ± 0.364

6.774 ± 0.368

1.11 ± 0.169

3.521 ± 0.402
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski