Jeongeupia sp. USM3

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Jeongeupia; unclassified Jeongeupia

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3426 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D9BDF9|A0A1D9BDF9_9NEIS MFS domain-containing protein OS=Jeongeupia sp. USM3 OX=1906741 GN=BJP62_07780 PE=4 SV=1
MM1 pKa = 6.53TTATTEE7 pKa = 4.04MPSPFLFTDD16 pKa = 3.93AAANKK21 pKa = 8.84VAEE24 pKa = 4.96LIAEE28 pKa = 4.35EE29 pKa = 4.62GNPDD33 pKa = 2.99LKK35 pKa = 11.14LRR37 pKa = 11.84VFVTGGGCSGFQYY50 pKa = 10.94GFTFDD55 pKa = 5.2EE56 pKa = 4.78IVNDD60 pKa = 5.42DD61 pKa = 3.59DD62 pKa = 4.79TEE64 pKa = 4.33VNKK67 pKa = 10.98AGVTLLVDD75 pKa = 3.74PMSYY79 pKa = 10.34QYY81 pKa = 11.57LVGAEE86 pKa = 3.75IDD88 pKa = 3.99YY89 pKa = 11.25VDD91 pKa = 4.35SLEE94 pKa = 4.56GSQFTIKK101 pKa = 10.63NPNAQSTCGCGSSFSVV117 pKa = 3.54

Molecular weight: 12.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D9BES9|A0A1D9BES9_9NEIS Uncharacterized protein OS=Jeongeupia sp. USM3 OX=1906741 GN=BJP62_11220 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.58RR14 pKa = 11.84THH16 pKa = 6.08GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.68TNGGRR28 pKa = 11.84NVIASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.13GRR39 pKa = 11.84AVLSAA44 pKa = 3.96

Molecular weight: 5.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3426

0

3426

1090397

29

1911

318.3

34.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.721 ± 0.056

0.887 ± 0.012

5.744 ± 0.03

5.098 ± 0.039

3.567 ± 0.028

8.391 ± 0.036

2.157 ± 0.021

4.651 ± 0.031

3.424 ± 0.039

11.185 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.212 ± 0.019

2.739 ± 0.023

4.985 ± 0.028

3.886 ± 0.03

6.755 ± 0.044

5.047 ± 0.031

4.997 ± 0.03

7.526 ± 0.04

1.498 ± 0.02

2.531 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski