Flavivirga eckloniae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavivirga

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4547 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K9PUU9|A0A2K9PUU9_9FLAO Adenylosuccinate lyase OS=Flavivirga eckloniae OX=1803846 GN=C1H87_19875 PE=4 SV=1
MM1 pKa = 7.44SKK3 pKa = 9.83IFKK6 pKa = 10.07ILFIFPIAVTMLLISCRR23 pKa = 11.84TEE25 pKa = 3.54EE26 pKa = 4.38TEE28 pKa = 5.37LIEE31 pKa = 4.76APEE34 pKa = 4.28DD35 pKa = 3.96EE36 pKa = 4.42ILVANSKK43 pKa = 9.76IANLMLKK50 pKa = 9.33TSSNDD55 pKa = 3.0GSFDD59 pKa = 4.37NIIDD63 pKa = 3.85KK64 pKa = 11.08SNCFNINFPLAVTANNQQINVSSKK88 pKa = 10.05SDD90 pKa = 3.48YY91 pKa = 10.99KK92 pKa = 10.43IIEE95 pKa = 4.46YY96 pKa = 10.31IFDD99 pKa = 4.2EE100 pKa = 6.13DD101 pKa = 6.18DD102 pKa = 5.07DD103 pKa = 4.51DD104 pKa = 4.99TDD106 pKa = 4.26ALDD109 pKa = 3.12ITFPIKK115 pKa = 10.32ISLKK119 pKa = 8.02DD120 pKa = 3.47HH121 pKa = 6.66SVVTVNNYY129 pKa = 8.84TEE131 pKa = 4.28LSSYY135 pKa = 11.52SNNCNGEE142 pKa = 3.86NEE144 pKa = 3.87QDD146 pKa = 4.91DD147 pKa = 5.65DD148 pKa = 5.32IEE150 pKa = 4.79CLDD153 pKa = 3.75FKK155 pKa = 11.57YY156 pKa = 10.34PITASIFNTNNEE168 pKa = 4.4LIDD171 pKa = 3.94VKK173 pKa = 9.95TLNSDD178 pKa = 3.13SSLYY182 pKa = 10.78EE183 pKa = 3.75LVDD186 pKa = 3.55NLNVSDD192 pKa = 4.66FVTINFPITVTLLDD206 pKa = 3.79GTEE209 pKa = 4.18LNVNNLTEE217 pKa = 4.5LEE219 pKa = 4.44TIIEE223 pKa = 4.54RR224 pKa = 11.84YY225 pKa = 10.51NNDD228 pKa = 3.26CDD230 pKa = 4.66EE231 pKa = 5.61DD232 pKa = 4.79DD233 pKa = 5.61DD234 pKa = 5.55YY235 pKa = 11.84DD236 pKa = 5.58YY237 pKa = 12.0NDD239 pKa = 5.49DD240 pKa = 5.46DD241 pKa = 6.71CDD243 pKa = 4.15DD244 pKa = 4.45CDD246 pKa = 4.89RR247 pKa = 11.84EE248 pKa = 4.12QLTDD252 pKa = 3.5VLTNCADD259 pKa = 3.24WTVDD263 pKa = 3.76KK264 pKa = 11.37LEE266 pKa = 4.81RR267 pKa = 11.84DD268 pKa = 3.72NNDD271 pKa = 3.46LDD273 pKa = 4.5NIYY276 pKa = 10.96DD277 pKa = 4.3GYY279 pKa = 9.77TFNFFTDD286 pKa = 3.97GTLSVYY292 pKa = 9.21WPSRR296 pKa = 11.84TVYY299 pKa = 8.62GTWVANGTGNNITVTINVPDD319 pKa = 4.42LPYY322 pKa = 11.09CNNDD326 pKa = 3.63WILHH330 pKa = 5.89EE331 pKa = 4.11ISKK334 pKa = 8.56YY335 pKa = 9.48TEE337 pKa = 3.94TKK339 pKa = 9.35VDD341 pKa = 3.8LRR343 pKa = 11.84VGGIDD348 pKa = 3.69RR349 pKa = 11.84LRR351 pKa = 11.84YY352 pKa = 10.34DD353 pKa = 3.52NGCNN357 pKa = 3.37

Molecular weight: 40.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K9PWG0|A0A2K9PWG0_9FLAO Uncharacterized protein OS=Flavivirga eckloniae OX=1803846 GN=C1H87_22815 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.92GRR40 pKa = 11.84KK41 pKa = 8.34KK42 pKa = 10.21ISVSSEE48 pKa = 3.74TRR50 pKa = 11.84HH51 pKa = 5.96KK52 pKa = 10.68KK53 pKa = 9.8

Molecular weight: 6.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4547

0

4547

1645158

32

4712

361.8

40.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.961 ± 0.043

0.779 ± 0.017

5.779 ± 0.036

6.301 ± 0.038

5.219 ± 0.031

6.415 ± 0.042

1.796 ± 0.019

8.03 ± 0.037

7.882 ± 0.056

9.041 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.988 ± 0.018

6.755 ± 0.036

3.376 ± 0.024

3.084 ± 0.02

3.295 ± 0.024

6.754 ± 0.03

6.066 ± 0.047

6.107 ± 0.029

1.149 ± 0.014

4.224 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski