Arthrobacter globiformis NBRC 12137

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Arthrobacter; Arthrobacter globiformis

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4524 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H0QP97|H0QP97_ARTGO DUF853 domain-containing protein OS=Arthrobacter globiformis NBRC 12137 OX=1077972 GN=ARGLB_073_01700 PE=4 SV=1
MM1 pKa = 7.45TEE3 pKa = 3.79NSEE6 pKa = 4.29SGDD9 pKa = 3.18AGKK12 pKa = 7.91THH14 pKa = 6.5NSSRR18 pKa = 11.84NPALEE23 pKa = 4.49GGGGQYY29 pKa = 10.48VEE31 pKa = 4.85GDD33 pKa = 3.48YY34 pKa = 11.64GDD36 pKa = 4.51AGVAGQEE43 pKa = 4.33SAAEE47 pKa = 4.07PKK49 pKa = 10.76GEE51 pKa = 4.27YY52 pKa = 9.43PAGDD56 pKa = 3.68YY57 pKa = 11.44GDD59 pKa = 4.58AGTVEE64 pKa = 4.47PSAEE68 pKa = 4.18VEE70 pKa = 3.89EE71 pKa = 4.98GEE73 pKa = 4.61YY74 pKa = 10.62PEE76 pKa = 5.45GDD78 pKa = 3.45YY79 pKa = 11.56GRR81 pKa = 11.84AGTVGQEE88 pKa = 4.1LPGEE92 pKa = 4.31EE93 pKa = 3.93EE94 pKa = 4.21GEE96 pKa = 4.34YY97 pKa = 10.64PEE99 pKa = 5.34GDD101 pKa = 3.29YY102 pKa = 11.3GAAGTAPEE110 pKa = 4.7GGAAEE115 pKa = 4.19DD116 pKa = 5.07LKK118 pKa = 11.51DD119 pKa = 3.89EE120 pKa = 5.3LIGGQVNAPRR130 pKa = 11.84NDD132 pKa = 3.97DD133 pKa = 3.9GGTSPGGG140 pKa = 3.3

Molecular weight: 13.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H0QKL2|H0QKL2_ARTGO Putative glycosyltransferase OS=Arthrobacter globiformis NBRC 12137 OX=1077972 GN=ARGLB_037_00620 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.97KK16 pKa = 9.33HH17 pKa = 4.25GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.68GRR40 pKa = 11.84TEE42 pKa = 4.13LSAA45 pKa = 4.86

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4524

0

4524

1468277

30

2029

324.6

34.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.233 ± 0.047

0.621 ± 0.01

5.547 ± 0.029

5.55 ± 0.032

3.237 ± 0.029

9.309 ± 0.03

2.071 ± 0.018

4.301 ± 0.03

2.754 ± 0.028

10.189 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.958 ± 0.015

2.471 ± 0.017

5.542 ± 0.031

3.112 ± 0.02

6.509 ± 0.034

5.909 ± 0.024

5.889 ± 0.03

8.296 ± 0.032

1.421 ± 0.015

2.082 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski