Lysobacter soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3530 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3D8V8D0|A0A3D8V8D0_9GAMM Thymidine kinase OS=Lysobacter soli OX=453783 GN=tdk PE=3 SV=1
MM1 pKa = 7.96SEE3 pKa = 3.52IAATTTFRR11 pKa = 11.84TWMCVVCGFIYY22 pKa = 10.64DD23 pKa = 3.83EE24 pKa = 4.46ALGLPEE30 pKa = 4.88EE31 pKa = 5.36GIAPGTRR38 pKa = 11.84WEE40 pKa = 4.7DD41 pKa = 3.78VPDD44 pKa = 3.14TWTCPDD50 pKa = 3.91CGVTKK55 pKa = 10.65DD56 pKa = 4.35DD57 pKa = 4.54FEE59 pKa = 4.47MMPLL63 pKa = 3.56

Molecular weight: 7.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3D8VF42|A0A3D8VF42_9GAMM 2-dehydro-3-deoxy-6-phosphogalactonate aldolase OS=Lysobacter soli OX=453783 GN=DX912_09245 PE=3 SV=1
MM1 pKa = 7.35SAGRR5 pKa = 11.84RR6 pKa = 11.84LASRR10 pKa = 11.84ATAWQAAAAALAALAFIPLGAPMALAAAVGGGAVVAGGLVAALMALGGGIQPAGMAMGRR69 pKa = 11.84LLAGVMLKK77 pKa = 9.58WVVVFGVLTLGLAGFKK93 pKa = 10.49LPPLPMLVGVLAATLAFVLANLLKK117 pKa = 10.59RR118 pKa = 4.01

Molecular weight: 11.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3530

0

3530

1159365

30

2743

328.4

35.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.899 ± 0.059

0.789 ± 0.012

6.12 ± 0.04

5.437 ± 0.039

3.497 ± 0.025

8.454 ± 0.043

2.237 ± 0.022

4.179 ± 0.026

2.854 ± 0.036

10.334 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.218 ± 0.019

2.57 ± 0.029

5.341 ± 0.032

3.493 ± 0.025

7.827 ± 0.048

5.128 ± 0.028

5.153 ± 0.034

7.624 ± 0.029

1.546 ± 0.017

2.301 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski