Collinsella tanakaei YIT 12063

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella tanakaei

Average proteome isoelectric point is 5.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2204 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1WJB8|G1WJB8_9ACTN 50S ribosomal protein L5 OS=Collinsella tanakaei YIT 12063 OX=742742 GN=rplE PE=3 SV=1
MM1 pKa = 7.55AVNEE5 pKa = 4.0QLLLEE10 pKa = 4.26VLEE13 pKa = 4.33QIRR16 pKa = 11.84PNLQADD22 pKa = 4.42GGDD25 pKa = 3.4MAYY28 pKa = 10.73VGVDD32 pKa = 3.23DD33 pKa = 5.69DD34 pKa = 4.93GVVSLEE40 pKa = 4.16LQGACAGCPMSQLTLSMGVEE60 pKa = 4.72RR61 pKa = 11.84ILKK64 pKa = 8.09EE65 pKa = 3.75HH66 pKa = 6.12VPGVTRR72 pKa = 11.84VEE74 pKa = 4.15AVNNGPAADD83 pKa = 4.52MYY85 pKa = 11.49DD86 pKa = 3.52EE87 pKa = 4.36YY88 pKa = 11.79APFF91 pKa = 4.6

Molecular weight: 9.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1WL11|G1WL11_9ACTN SHSP domain-containing protein OS=Collinsella tanakaei YIT 12063 OX=742742 GN=HMPREF9452_02024 PE=3 SV=1
MM1 pKa = 7.45RR2 pKa = 11.84TLKK5 pKa = 10.67SRR7 pKa = 11.84LEE9 pKa = 3.87FEE11 pKa = 4.32RR12 pKa = 11.84AFTQGRR18 pKa = 11.84RR19 pKa = 11.84YY20 pKa = 8.72NHH22 pKa = 6.34PLIRR26 pKa = 11.84MVICDD31 pKa = 4.29AVNEE35 pKa = 4.18GDD37 pKa = 3.65PGRR40 pKa = 11.84VAFVAAKK47 pKa = 10.26RR48 pKa = 11.84LGCAVVRR55 pKa = 11.84NRR57 pKa = 11.84SKK59 pKa = 10.82RR60 pKa = 11.84VLRR63 pKa = 11.84EE64 pKa = 3.2AARR67 pKa = 11.84AVKK70 pKa = 10.43LPVDD74 pKa = 4.56GYY76 pKa = 11.22DD77 pKa = 3.36IILFATPRR85 pKa = 11.84TRR87 pKa = 11.84DD88 pKa = 3.2SSPQQMIEE96 pKa = 4.16ALCKK100 pKa = 9.46LCEE103 pKa = 4.01RR104 pKa = 11.84ADD106 pKa = 3.48LHH108 pKa = 7.12VSVRR112 pKa = 3.57

Molecular weight: 12.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2204

0

2204

707062

29

2459

320.8

34.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.662 ± 0.081

1.554 ± 0.022

6.435 ± 0.046

6.251 ± 0.056

3.629 ± 0.032

8.145 ± 0.057

1.883 ± 0.026

5.314 ± 0.044

3.74 ± 0.048

9.099 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.811 ± 0.026

2.982 ± 0.039

4.238 ± 0.034

3.033 ± 0.029

6.012 ± 0.058

6.171 ± 0.049

5.24 ± 0.04

7.959 ± 0.045

1.012 ± 0.018

2.829 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski