Dokdonella koreensis DS-123

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Dokdonella; Dokdonella koreensis

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3774 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160DXW4|A0A160DXW4_9GAMM Uncharacterized protein OS=Dokdonella koreensis DS-123 OX=1300342 GN=I596_3599 PE=4 SV=1
MM1 pKa = 7.39TMQSRR6 pKa = 11.84AARR9 pKa = 11.84AAVSLCVMVVALAAGALGAQPATGPLQFSAPVSAPFVEE47 pKa = 4.87TKK49 pKa = 10.4PVVANPFSEE58 pKa = 4.34AARR61 pKa = 11.84PVSPRR66 pKa = 11.84AFSTEE71 pKa = 3.73FPAEE75 pKa = 4.03VEE77 pKa = 4.39PNGTPATATPLGAATYY93 pKa = 11.27VRR95 pKa = 11.84MQGNLFPAADD105 pKa = 3.25VDD107 pKa = 4.31YY108 pKa = 11.09FSFAAQAGDD117 pKa = 4.06RR118 pKa = 11.84IYY120 pKa = 11.3AAVITAANTSTSADD134 pKa = 3.53SQLNLLDD141 pKa = 3.82TDD143 pKa = 3.78GTTVLEE149 pKa = 4.51FDD151 pKa = 5.18DD152 pKa = 6.03DD153 pKa = 4.66DD154 pKa = 5.92GSFAATSSSIAGTVIPADD172 pKa = 3.28GTYY175 pKa = 10.21YY176 pKa = 10.97LSVNHH181 pKa = 5.78FTAAQTLRR189 pKa = 11.84PYY191 pKa = 9.28EE192 pKa = 3.78LHH194 pKa = 6.69VRR196 pKa = 11.84IQRR199 pKa = 11.84GSPTPEE205 pKa = 3.74VEE207 pKa = 4.98SNDD210 pKa = 3.75TPGTANPLPANGWVSGTRR228 pKa = 11.84NPPAATEE235 pKa = 3.98QDD237 pKa = 3.29WYY239 pKa = 11.18AFTANAGDD247 pKa = 4.02TVFLSLDD254 pKa = 3.77ADD256 pKa = 3.89PEE258 pKa = 4.32RR259 pKa = 11.84DD260 pKa = 3.4GVQWDD265 pKa = 3.61GRR267 pKa = 11.84LGIALFGDD275 pKa = 4.35AANQILVVNDD285 pKa = 3.69TSSGAGNPLSEE296 pKa = 4.46ALVFTIKK303 pKa = 9.79TAGTYY308 pKa = 9.75FAFVDD313 pKa = 3.85SATAAVGGPTATYY326 pKa = 8.87HH327 pKa = 6.62LSVSVQPPPTPMPLAACTTYY347 pKa = 10.85TSTDD351 pKa = 3.19VPKK354 pKa = 10.5TIGPANGLVSSLITVPGNPRR374 pKa = 11.84IGDD377 pKa = 3.93LNVEE381 pKa = 3.99IQLNHH386 pKa = 6.73ALMADD391 pKa = 3.52VDD393 pKa = 3.68AHH395 pKa = 6.32LRR397 pKa = 11.84SPSGNDD403 pKa = 2.46IGLFTDD409 pKa = 3.65IGAAATGGQAQMDD422 pKa = 4.0VVFDD426 pKa = 4.49DD427 pKa = 4.58EE428 pKa = 4.87AAIPPTFTALRR439 pKa = 11.84NMALKK444 pKa = 10.66PEE446 pKa = 4.26LNYY449 pKa = 10.57RR450 pKa = 11.84LSWFDD455 pKa = 3.41GEE457 pKa = 4.52NAGGTWTLDD466 pKa = 3.94LRR468 pKa = 11.84DD469 pKa = 4.39DD470 pKa = 4.06VNNASGGTLTSWSLRR485 pKa = 11.84ICEE488 pKa = 4.53PPPPPTCGPGFVQTTVYY505 pKa = 9.77STDD508 pKa = 3.92FEE510 pKa = 4.57SGAAGFTHH518 pKa = 7.23SGTQDD523 pKa = 2.74EE524 pKa = 4.98WEE526 pKa = 4.66LGLPATVATTTANPVAAFNSCASGVNCWKK555 pKa = 9.61TDD557 pKa = 3.3LDD559 pKa = 3.48NTYY562 pKa = 10.8NISSNQNLTSPSINLGGFSPPIVVRR587 pKa = 11.84WSHH590 pKa = 5.1QYY592 pKa = 10.56QMEE595 pKa = 4.34SASFDD600 pKa = 3.92LYY602 pKa = 11.36SVDD605 pKa = 3.36LRR607 pKa = 11.84EE608 pKa = 4.21VGGANPVRR616 pKa = 11.84LFEE619 pKa = 4.35WLDD622 pKa = 3.3ATMTDD627 pKa = 3.2AVGNPTVNIPARR639 pKa = 11.84AGWSQVVTRR648 pKa = 11.84ADD650 pKa = 3.17ALAGQNVEE658 pKa = 4.9LNFNLTSDD666 pKa = 3.38NTVNFGGVAVDD677 pKa = 4.07DD678 pKa = 4.53VSVTACRR685 pKa = 11.84VAIADD690 pKa = 4.0LSITKK695 pKa = 9.61TDD697 pKa = 3.45GVTTAVPGGSVTYY710 pKa = 10.02TITASNAGPDD720 pKa = 3.77ADD722 pKa = 4.15TAATVADD729 pKa = 4.52TFPAALTCTWTCVGAGGGTCTAAGSGNIADD759 pKa = 4.33TVNLPSGGSVTYY771 pKa = 8.84TASCAIGPSVTGTLSNTATVTASVADD797 pKa = 4.17PNPANNSATDD807 pKa = 3.63TDD809 pKa = 4.28TLTPQADD816 pKa = 3.73LAITKK821 pKa = 9.28TDD823 pKa = 3.06GVTSVIQGGSTTYY836 pKa = 10.62TITASNAGPSNASGATVTDD855 pKa = 4.01TFPASLTCTWTCVGAGGGTCTAAGSGNIADD885 pKa = 4.5TVNLPAGGSTTHH897 pKa = 6.41TASCGLSASATGTLSNTATVAAPAGVTDD925 pKa = 4.31PTPGNNSATDD935 pKa = 3.41TDD937 pKa = 4.55TITLLGAAVTASKK950 pKa = 9.37TVAGSFVPGSPVTYY964 pKa = 9.69TVTLTNSLGAQANNPGDD981 pKa = 3.91EE982 pKa = 4.4FTDD985 pKa = 3.6VLPAALTLVSATATSGSAVATIGTNTVTWNGAIPGGGSVTITITATLSPSATGTVANQGSFAYY1048 pKa = 10.4DD1049 pKa = 3.17GDD1051 pKa = 4.5ANGSNEE1057 pKa = 4.4TNGLTDD1063 pKa = 5.48DD1064 pKa = 4.44PAQPGAADD1072 pKa = 3.43PTVFTVGAAVADD1084 pKa = 4.02LAITKK1089 pKa = 9.57TDD1091 pKa = 3.23GVTTATPGGSTTYY1104 pKa = 10.45TIVASNAGPSAVTGATVTDD1123 pKa = 4.14TFPASLTCTWTCAGSGGGTCAPSGSGNIASPVTLPVGASATYY1165 pKa = 8.69TATCAISATASGTLVNTATIAVPAGVNDD1193 pKa = 3.85PTPGNNSATDD1203 pKa = 3.72TDD1205 pKa = 4.25TLAATADD1212 pKa = 3.86LAITKK1217 pKa = 9.51TDD1219 pKa = 3.38GVTSATPGDD1228 pKa = 3.83STTYY1232 pKa = 10.41TIVASNAGPSAVTGATVTDD1251 pKa = 3.96TFAASLTCTWTCAGSGGGTCAPSGSGNIASPVTLPVGASATYY1293 pKa = 8.69TATCAISATASGTLVNTATIAAPAGVTDD1321 pKa = 4.31PTPGNNSATDD1331 pKa = 3.52TDD1333 pKa = 3.84ALGAEE1338 pKa = 4.41TALSISKK1345 pKa = 9.21TDD1347 pKa = 3.12GATTVAPGGTLTYY1360 pKa = 10.01TIVASNVGPSAAVGATVSDD1379 pKa = 4.59AFPAACVAPAWTCAASGGGNCPAGGSGAIAASVDD1413 pKa = 4.05LPAGAAATFTATCPVDD1429 pKa = 3.22PALADD1434 pKa = 3.42GTVITNTATVAEE1446 pKa = 4.47AAGATDD1452 pKa = 5.28PDD1454 pKa = 4.41PSDD1457 pKa = 3.98NSATDD1462 pKa = 3.35TTTAAVPVAGAAVSVRR1478 pKa = 11.84KK1479 pKa = 9.67SVSGSFLPGGAIRR1492 pKa = 11.84YY1493 pKa = 6.61TLVLVNSGGPQGDD1506 pKa = 3.65NPGDD1510 pKa = 3.81EE1511 pKa = 4.79LTDD1514 pKa = 3.46VLPPQLVLVAASASSGAASANPATNTVTWNGAIPAGGSVTVLIDD1558 pKa = 3.07ATIRR1562 pKa = 11.84SDD1564 pKa = 3.46ASGTIGNQAGVAYY1577 pKa = 10.33DD1578 pKa = 3.73GDD1580 pKa = 4.13GDD1582 pKa = 4.14GSNEE1586 pKa = 3.7ATALSDD1592 pKa = 3.87DD1593 pKa = 4.09PAVPGAADD1601 pKa = 3.37PTVFPVGAPAVVVPVPTLTGLGALLLGLGLAGLAIAARR1639 pKa = 11.84PRR1641 pKa = 11.84RR1642 pKa = 11.84RR1643 pKa = 11.84LRR1645 pKa = 3.48

Molecular weight: 161.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A167H409|A0A167H409_9GAMM Uncharacterized protein OS=Dokdonella koreensis DS-123 OX=1300342 GN=I596_2808 PE=4 SV=1
MM1 pKa = 7.15GHH3 pKa = 6.7RR4 pKa = 11.84GVVFWQRR11 pKa = 11.84KK12 pKa = 4.67VRR14 pKa = 11.84GIVPGSAVRR23 pKa = 11.84AGSGRR28 pKa = 11.84FITGAQRR35 pKa = 11.84VPAAARR41 pKa = 11.84VLRR44 pKa = 11.84AA45 pKa = 3.48

Molecular weight: 4.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3774

0

3774

1322314

37

2826

350.4

37.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.354 ± 0.071

0.855 ± 0.013

5.922 ± 0.028

4.905 ± 0.042

3.263 ± 0.024

9.031 ± 0.048

2.071 ± 0.021

4.079 ± 0.028

2.001 ± 0.032

10.811 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.707 ± 0.017

2.267 ± 0.028

5.772 ± 0.028

3.293 ± 0.023

8.218 ± 0.054

4.858 ± 0.043

5.305 ± 0.058

7.521 ± 0.037

1.496 ± 0.018

2.271 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski