Nocardioides terrae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Nocardioides

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3705 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I1NHP2|A0A1I1NHP2_9ACTN Uncharacterized protein OS=Nocardioides terrae OX=574651 GN=SAMN04487968_1168 PE=4 SV=1
MM1 pKa = 7.87SYY3 pKa = 10.86PEE5 pKa = 4.27DD6 pKa = 3.35LRR8 pKa = 11.84YY9 pKa = 7.84TAEE12 pKa = 4.29HH13 pKa = 5.87EE14 pKa = 4.46WVRR17 pKa = 11.84TPGDD21 pKa = 3.22HH22 pKa = 6.59EE23 pKa = 4.7GSVRR27 pKa = 11.84IGITHH32 pKa = 6.7YY33 pKa = 11.15AQDD36 pKa = 3.69ALGDD40 pKa = 3.66IVYY43 pKa = 10.51VSLPEE48 pKa = 3.85VGATVGAGGACGEE61 pKa = 4.28LEE63 pKa = 4.31STKK66 pKa = 10.7SVSDD70 pKa = 3.36VYY72 pKa = 11.42APVSGEE78 pKa = 3.81VVAINDD84 pKa = 4.13ALDD87 pKa = 3.8ATPEE91 pKa = 4.09LVNDD95 pKa = 4.08DD96 pKa = 4.47PYY98 pKa = 11.58GGGWLFEE105 pKa = 4.65LVPSDD110 pKa = 3.63PAALDD115 pKa = 3.64GLIDD119 pKa = 3.76AAAYY123 pKa = 8.67QATLEE128 pKa = 4.26GG129 pKa = 3.89

Molecular weight: 13.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I1N0R9|A0A1I1N0R9_9ACTN 30S ribosomal protein S11 OS=Nocardioides terrae OX=574651 GN=rpsK PE=3 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.93RR4 pKa = 11.84TYY6 pKa = 10.0QPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.16GRR40 pKa = 11.84KK41 pKa = 9.02DD42 pKa = 3.21LAVV45 pKa = 3.28

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3705

0

3705

1209282

39

2075

326.4

34.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.227 ± 0.056

0.665 ± 0.01

6.438 ± 0.033

5.518 ± 0.043

2.819 ± 0.022

9.219 ± 0.038

2.227 ± 0.015

3.559 ± 0.027

2.039 ± 0.03

10.39 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.788 ± 0.014

1.772 ± 0.021

5.543 ± 0.032

2.743 ± 0.021

7.637 ± 0.043

5.364 ± 0.027

6.092 ± 0.031

9.435 ± 0.039

1.544 ± 0.017

1.981 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski