Baminivirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; unclassified Geminiviridae

Average proteome isoelectric point is 8.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J9TCS3|J9TCS3_9GEMI Putative movement protein OS=Baminivirus OX=1229324 PE=4 SV=1
MM1 pKa = 7.1AQPRR5 pKa = 11.84FRR7 pKa = 11.84LQGKK11 pKa = 9.6NILLTYY17 pKa = 6.94PQCNLEE23 pKa = 4.26VKK25 pKa = 10.03HH26 pKa = 6.17VCDD29 pKa = 4.01EE30 pKa = 4.19LALRR34 pKa = 11.84LPPGRR39 pKa = 11.84CSGVLEE45 pKa = 4.09RR46 pKa = 11.84HH47 pKa = 5.56QDD49 pKa = 3.74GNPHH53 pKa = 6.88LHH55 pKa = 6.51ILWEE59 pKa = 3.94LRR61 pKa = 11.84RR62 pKa = 11.84RR63 pKa = 11.84LDD65 pKa = 3.34TQNPRR70 pKa = 11.84FFDD73 pKa = 3.03VDD75 pKa = 3.67TFHH78 pKa = 7.26PNVVVVRR85 pKa = 11.84SVRR88 pKa = 11.84GARR91 pKa = 11.84DD92 pKa = 3.53YY93 pKa = 10.76IAKK96 pKa = 9.2TGAEE100 pKa = 4.45VYY102 pKa = 9.72TNEE105 pKa = 4.42PGEE108 pKa = 4.36PEE110 pKa = 4.16CEE112 pKa = 3.86SWGEE116 pKa = 3.86ILEE119 pKa = 4.35QATSRR124 pKa = 11.84EE125 pKa = 3.98GFLDD129 pKa = 3.81LVRR132 pKa = 11.84KK133 pKa = 9.53HH134 pKa = 6.14KK135 pKa = 10.57PRR137 pKa = 11.84DD138 pKa = 3.62FILNMEE144 pKa = 4.36RR145 pKa = 11.84LEE147 pKa = 4.1YY148 pKa = 10.33AANILFAEE156 pKa = 4.82PEE158 pKa = 3.91QSFVSMYY165 pKa = 8.02TTFAPPSACHH175 pKa = 6.63DD176 pKa = 2.68WWLQYY181 pKa = 9.97GARR184 pKa = 11.84PRR186 pKa = 11.84LEE188 pKa = 4.34GRR190 pKa = 11.84LQSLYY195 pKa = 11.06VEE197 pKa = 4.66GASRR201 pKa = 11.84IGKK204 pKa = 6.82TEE206 pKa = 3.79WARR209 pKa = 11.84SLGPHH214 pKa = 6.12VYY216 pKa = 10.12FNNMYY221 pKa = 10.78NLDD224 pKa = 4.08DD225 pKa = 4.66LKK227 pKa = 11.3SALRR231 pKa = 11.84YY232 pKa = 10.36AEE234 pKa = 3.99FAVFDD239 pKa = 5.57DD240 pKa = 4.26IPFDD244 pKa = 5.0RR245 pKa = 11.84LPAWKK250 pKa = 10.39SFFGCQHH257 pKa = 6.68TFTLTDD263 pKa = 3.87RR264 pKa = 11.84YY265 pKa = 9.97RR266 pKa = 11.84KK267 pKa = 10.13KK268 pKa = 10.13FTISDD273 pKa = 3.41WSKK276 pKa = 10.72PSIFLVNPDD285 pKa = 3.31MTYY288 pKa = 10.96DD289 pKa = 2.99AWNKK293 pKa = 8.31GRR295 pKa = 11.84EE296 pKa = 3.97WEE298 pKa = 4.3YY299 pKa = 10.47IKK301 pKa = 11.02QNAVIVKK308 pKa = 8.48TDD310 pKa = 2.82SRR312 pKa = 11.84FYY314 pKa = 11.47

Molecular weight: 36.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J9TCS3|J9TCS3_9GEMI Putative movement protein OS=Baminivirus OX=1229324 PE=4 SV=1
MM1 pKa = 7.98RR2 pKa = 11.84DD3 pKa = 3.21LRR5 pKa = 11.84DD6 pKa = 3.87FYY8 pKa = 11.59VPRR11 pKa = 11.84LRR13 pKa = 11.84MNEE16 pKa = 4.52FIRR19 pKa = 11.84RR20 pKa = 11.84PIGDD24 pKa = 4.08GLKK27 pKa = 10.19EE28 pKa = 4.21SPDD31 pKa = 3.6LCVLPGYY38 pKa = 10.26LGRR41 pKa = 11.84TNQVRR46 pKa = 11.84LSYY49 pKa = 10.08PGPTFTRR56 pKa = 11.84SVTRR60 pKa = 11.84SCPARR65 pKa = 11.84SRR67 pKa = 11.84DD68 pKa = 3.35PHH70 pKa = 7.97VIFLGWFGGAGGFTPQHH87 pKa = 6.19FLSIAA92 pKa = 3.25

Molecular weight: 10.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

897

92

491

299.0

34.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.581 ± 1.249

1.226 ± 0.453

5.797 ± 0.116

4.125 ± 1.312

4.794 ± 1.002

7.246 ± 1.014

3.456 ± 0.464

4.125 ± 0.138

5.463 ± 1.182

8.361 ± 0.61

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.23 ± 0.32

3.79 ± 0.357

4.905 ± 1.327

3.567 ± 0.297

8.027 ± 1.164

6.466 ± 0.672

6.912 ± 1.209

5.351 ± 0.196

2.118 ± 0.342

4.459 ± 0.244
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski