Calocera cornea HHB12733

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Dacrymycetes; Dacrymycetales; Dacrymycetaceae; Calocera; Calocera cornea

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13078 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A165H3I1|A0A165H3I1_9BASI Uncharacterized protein OS=Calocera cornea HHB12733 OX=1353952 GN=CALCODRAFT_228751 PE=4 SV=1
MM1 pKa = 7.4FGSTLLTTVVAALFTSIVSASPVARR26 pKa = 11.84QGVTVEE32 pKa = 4.89LGWITNDD39 pKa = 3.35KK40 pKa = 11.03LGGAWTKK47 pKa = 7.44MTQGNSSAGVPIGISPNTGGADD69 pKa = 3.05IRR71 pKa = 11.84QLFALYY77 pKa = 10.83GDD79 pKa = 3.92ASGDD83 pKa = 3.26NTYY86 pKa = 10.41TIIEE90 pKa = 5.1LDD92 pKa = 3.12TGNYY96 pKa = 9.66VSTLQTTNSDD106 pKa = 3.01TWSSGFEE113 pKa = 3.85MLQTSTVAADD123 pKa = 3.26NTVFKK128 pKa = 10.87VSPGYY133 pKa = 10.38DD134 pKa = 2.92EE135 pKa = 4.95GSWYY139 pKa = 9.73IQPNTPSNTQLGWYY153 pKa = 9.97SYY155 pKa = 10.73DD156 pKa = 3.72DD157 pKa = 3.81PAAPFIPIILNEE169 pKa = 4.19PLQEE173 pKa = 4.93PDD175 pKa = 3.53QSWTFHH181 pKa = 6.51PLL183 pKa = 3.0

Molecular weight: 19.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A165D7C3|A0A165D7C3_9BASI Uncharacterized protein OS=Calocera cornea HHB12733 OX=1353952 GN=CALCODRAFT_487314 PE=4 SV=1
QQ1 pKa = 7.0LKK3 pKa = 10.4HH4 pKa = 6.8RR5 pKa = 11.84FRR7 pKa = 11.84QLKK10 pKa = 9.82HH11 pKa = 6.48RR12 pKa = 11.84FRR14 pKa = 11.84QLNHH18 pKa = 6.93RR19 pKa = 11.84FRR21 pKa = 11.84QLKK24 pKa = 9.84HH25 pKa = 6.45RR26 pKa = 11.84FRR28 pKa = 11.84QLKK31 pKa = 9.82HH32 pKa = 6.48RR33 pKa = 11.84FRR35 pKa = 11.84QLNHH39 pKa = 6.61RR40 pKa = 11.84FSQRR44 pKa = 11.84KK45 pKa = 8.03HH46 pKa = 6.08RR47 pKa = 11.84FRR49 pKa = 11.84QLNHH53 pKa = 6.72RR54 pKa = 11.84FSQLKK59 pKa = 10.01HH60 pKa = 6.39RR61 pKa = 11.84FRR63 pKa = 11.84QLNHH67 pKa = 6.72RR68 pKa = 11.84FSQLKK73 pKa = 9.33HH74 pKa = 5.46

Molecular weight: 9.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13076

2

13078

5237295

49

5001

400.5

44.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.596 ± 0.022

1.279 ± 0.008

5.35 ± 0.017

6.061 ± 0.024

3.397 ± 0.013

7.107 ± 0.02

2.495 ± 0.01

4.291 ± 0.017

4.07 ± 0.02

9.473 ± 0.022

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.009

2.944 ± 0.013

7.064 ± 0.028

3.824 ± 0.017

6.636 ± 0.025

7.808 ± 0.023

5.835 ± 0.014

6.34 ± 0.018

1.601 ± 0.009

2.609 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski