Trichinella papuae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15285 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V1N5L1|A0A0V1N5L1_9BILA Cytoskeleton-associated protein 5 OS=Trichinella papuae OX=268474 GN=Ckap5 PE=4 SV=1
MM1 pKa = 7.5AGVPPFDD8 pKa = 3.28VPSFNFYY15 pKa = 11.35VEE17 pKa = 4.86FIKK20 pKa = 10.46ILPKK24 pKa = 10.66NFVHH28 pKa = 6.13RR29 pKa = 11.84TYY31 pKa = 10.94NIQTEE36 pKa = 4.73TEE38 pKa = 4.12EE39 pKa = 4.48STHH42 pKa = 6.63SSQLYY47 pKa = 8.13EE48 pKa = 3.96VEE50 pKa = 4.46YY51 pKa = 10.35PMGMYY56 pKa = 10.07NPKK59 pKa = 10.1QPFEE63 pKa = 4.11VEE65 pKa = 3.57RR66 pKa = 11.84FEE68 pKa = 4.44IRR70 pKa = 11.84DD71 pKa = 3.56GAGEE75 pKa = 3.97DD76 pKa = 3.68AEE78 pKa = 4.96EE79 pKa = 3.94IAAVQQHH86 pKa = 5.92EE87 pKa = 4.56EE88 pKa = 4.33DD89 pKa = 3.88FGDD92 pKa = 3.38RR93 pKa = 11.84TPAEE97 pKa = 4.61EE98 pKa = 4.28YY99 pKa = 8.61TSSVASYY106 pKa = 11.59SNASPNDD113 pKa = 3.96DD114 pKa = 5.69DD115 pKa = 7.26DD116 pKa = 7.58DD117 pKa = 7.16DD118 pKa = 7.3DD119 pKa = 7.05DD120 pKa = 4.79DD121 pKa = 5.59ASSIEE126 pKa = 3.58ADD128 pKa = 3.85YY129 pKa = 11.41YY130 pKa = 11.39FEE132 pKa = 4.31

Molecular weight: 15.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V1LZC4|A0A0V1LZC4_9BILA Uncharacterized protein OS=Trichinella papuae OX=268474 GN=T10_4483 PE=4 SV=1
MM1 pKa = 7.42QNFHH5 pKa = 7.03SLGANIATPQAMPQAIFQNFRR26 pKa = 11.84IFRR29 pKa = 11.84NFSPRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84PRR38 pKa = 11.84LRR40 pKa = 11.84LRR42 pKa = 11.84AA43 pKa = 3.74

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11419

3866

15285

7709026

21

16819

504.4

57.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.447 ± 0.015

2.641 ± 0.02

5.225 ± 0.014

6.389 ± 0.025

4.571 ± 0.016

4.892 ± 0.023

2.465 ± 0.008

5.594 ± 0.016

6.091 ± 0.021

9.735 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.429 ± 0.009

5.099 ± 0.014

4.284 ± 0.019

4.361 ± 0.013

5.521 ± 0.018

8.339 ± 0.022

5.281 ± 0.014

6.354 ± 0.014

1.183 ± 0.006

3.1 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski