Amino acid dipepetide frequency for Corchorus yellow vein virus - [Hoa Binh]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.963AlaAla: 1.963 ± 0.716
0.654AlaCys: 0.654 ± 0.642
3.272AlaAsp: 3.272 ± 1.587
3.927AlaGlu: 3.927 ± 1.925
0.654AlaPhe: 0.654 ± 0.602
0.654AlaGly: 0.654 ± 0.642
1.309AlaHis: 1.309 ± 0.807
3.927AlaIle: 3.927 ± 1.53
6.545AlaLys: 6.545 ± 1.138
5.236AlaLeu: 5.236 ± 2.5
0.0AlaMet: 0.0 ± 0.0
3.272AlaAsn: 3.272 ± 1.083
3.927AlaPro: 3.927 ± 0.545
1.963AlaGln: 1.963 ± 0.993
2.618AlaArg: 2.618 ± 1.806
8.508AlaSer: 8.508 ± 1.599
3.272AlaThr: 3.272 ± 1.981
0.654AlaVal: 0.654 ± 0.602
1.309AlaTrp: 1.309 ± 0.686
1.309AlaTyr: 1.309 ± 0.727
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
2.618CysGlu: 2.618 ± 0.868
0.654CysPhe: 0.654 ± 0.602
1.309CysGly: 1.309 ± 0.891
0.0CysHis: 0.0 ± 0.0
1.309CysIle: 1.309 ± 1.082
1.963CysLys: 1.963 ± 0.716
0.654CysLeu: 0.654 ± 0.642
1.309CysMet: 1.309 ± 0.876
3.272CysAsn: 3.272 ± 0.833
0.654CysPro: 0.654 ± 0.544
0.0CysGln: 0.0 ± 0.0
1.309CysArg: 1.309 ± 0.891
1.309CysSer: 1.309 ± 1.098
2.618CysThr: 2.618 ± 0.738
1.963CysVal: 1.963 ± 0.916
1.309CysTrp: 1.309 ± 1.219
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.272AspAla: 3.272 ± 1.271
0.654AspCys: 0.654 ± 0.751
1.963AspAsp: 1.963 ± 0.953
2.618AspGlu: 2.618 ± 0.589
1.309AspPhe: 1.309 ± 0.803
2.618AspGly: 2.618 ± 1.749
1.309AspHis: 1.309 ± 0.876
2.618AspIle: 2.618 ± 0.896
1.309AspLys: 1.309 ± 0.712
5.89AspLeu: 5.89 ± 0.657
0.654AspMet: 0.654 ± 0.692
2.618AspAsn: 2.618 ± 0.953
2.618AspPro: 2.618 ± 1.107
1.309AspGln: 1.309 ± 0.891
2.618AspArg: 2.618 ± 1.614
4.581AspSer: 4.581 ± 1.169
1.309AspThr: 1.309 ± 1.082
3.272AspVal: 3.272 ± 1.046
1.963AspTrp: 1.963 ± 1.632
2.618AspTyr: 2.618 ± 1.115
0.0AspXaa: 0.0 ± 0.0
Glu
2.618GluAla: 2.618 ± 1.105
1.309GluCys: 1.309 ± 0.983
1.309GluAsp: 1.309 ± 0.966
3.927GluGlu: 3.927 ± 1.778
3.927GluPhe: 3.927 ± 2.673
1.963GluGly: 1.963 ± 0.716
1.309GluHis: 1.309 ± 0.845
1.309GluIle: 1.309 ± 1.082
2.618GluLys: 2.618 ± 1.619
3.272GluLeu: 3.272 ± 1.404
0.0GluMet: 0.0 ± 0.0
3.272GluAsn: 3.272 ± 1.95
2.618GluPro: 2.618 ± 0.684
3.272GluGln: 3.272 ± 1.188
1.309GluArg: 1.309 ± 0.59
5.89GluSer: 5.89 ± 3.487
1.963GluThr: 1.963 ± 0.651
1.963GluVal: 1.963 ± 1.178
0.654GluTrp: 0.654 ± 0.544
2.618GluTyr: 2.618 ± 1.469
0.0GluXaa: 0.0 ± 0.0
Phe
1.309PheAla: 1.309 ± 0.59
1.963PheCys: 1.963 ± 0.757
1.309PheAsp: 1.309 ± 0.727
1.963PheGlu: 1.963 ± 0.716
3.272PhePhe: 3.272 ± 1.155
1.963PheGly: 1.963 ± 1.325
0.0PheHis: 0.0 ± 0.0
0.654PheIle: 0.654 ± 0.602
2.618PheLys: 2.618 ± 0.821
3.272PheLeu: 3.272 ± 1.706
0.654PheMet: 0.654 ± 0.544
3.927PheAsn: 3.927 ± 1.493
3.272PhePro: 3.272 ± 1.635
3.272PheGln: 3.272 ± 1.561
3.272PheArg: 3.272 ± 1.364
5.236PheSer: 5.236 ± 1.847
2.618PheThr: 2.618 ± 1.283
1.963PheVal: 1.963 ± 1.227
1.309PheTrp: 1.309 ± 1.284
1.309PheTyr: 1.309 ± 0.858
0.0PheXaa: 0.0 ± 0.0
Gly
3.927GlyAla: 3.927 ± 1.723
1.309GlyCys: 1.309 ± 0.858
0.654GlyAsp: 0.654 ± 0.541
1.963GlyGlu: 1.963 ± 0.651
0.654GlyPhe: 0.654 ± 0.741
4.581GlyGly: 4.581 ± 1.43
0.654GlyHis: 0.654 ± 0.544
2.618GlyIle: 2.618 ± 0.948
5.89GlyLys: 5.89 ± 1.904
0.654GlyLeu: 0.654 ± 0.541
0.654GlyMet: 0.654 ± 0.545
0.654GlyAsn: 0.654 ± 0.642
5.236GlyPro: 5.236 ± 1.255
1.963GlyGln: 1.963 ± 1.162
1.309GlyArg: 1.309 ± 0.891
6.545GlySer: 6.545 ± 1.507
3.272GlyThr: 3.272 ± 1.228
3.272GlyVal: 3.272 ± 0.971
0.0GlyTrp: 0.0 ± 0.0
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.618HisAla: 2.618 ± 0.924
2.618HisCys: 2.618 ± 1.107
1.963HisAsp: 1.963 ± 1.21
0.654HisGlu: 0.654 ± 0.609
1.309HisPhe: 1.309 ± 0.59
1.309HisGly: 1.309 ± 1.219
1.309HisHis: 1.309 ± 0.966
0.654HisIle: 0.654 ± 0.602
0.654HisLys: 0.654 ± 0.602
3.927HisLeu: 3.927 ± 1.404
0.654HisMet: 0.654 ± 0.544
3.272HisAsn: 3.272 ± 1.318
1.309HisPro: 1.309 ± 0.876
2.618HisGln: 2.618 ± 0.99
3.272HisArg: 3.272 ± 1.69
1.309HisSer: 1.309 ± 1.082
3.272HisThr: 3.272 ± 1.815
2.618HisVal: 2.618 ± 1.246
0.0HisTrp: 0.0 ± 0.0
0.654HisTyr: 0.654 ± 0.541
0.0HisXaa: 0.0 ± 0.0
Ile
1.309IleAla: 1.309 ± 0.807
1.309IleCys: 1.309 ± 0.867
4.581IleAsp: 4.581 ± 1.554
3.927IleGlu: 3.927 ± 1.413
1.963IlePhe: 1.963 ± 0.998
2.618IleGly: 2.618 ± 1.594
1.309IleHis: 1.309 ± 0.876
3.272IleIle: 3.272 ± 1.728
3.927IleLys: 3.927 ± 1.481
3.272IleLeu: 3.272 ± 1.212
0.0IleMet: 0.0 ± 0.0
4.581IleAsn: 4.581 ± 1.175
1.963IlePro: 1.963 ± 0.651
3.927IleGln: 3.927 ± 1.943
3.927IleArg: 3.927 ± 1.733
3.272IleSer: 3.272 ± 1.179
3.272IleThr: 3.272 ± 0.841
3.272IleVal: 3.272 ± 1.071
1.963IleTrp: 1.963 ± 1.355
4.581IleTyr: 4.581 ± 1.4
0.0IleXaa: 0.0 ± 0.0
Lys
1.309LysAla: 1.309 ± 1.088
1.309LysCys: 1.309 ± 0.797
5.89LysAsp: 5.89 ± 1.824
2.618LysGlu: 2.618 ± 2.176
1.963LysPhe: 1.963 ± 0.802
2.618LysGly: 2.618 ± 0.589
2.618LysHis: 2.618 ± 1.221
3.927LysIle: 3.927 ± 1.206
2.618LysLys: 2.618 ± 1.427
3.272LysLeu: 3.272 ± 1.636
1.963LysMet: 1.963 ± 0.909
3.272LysAsn: 3.272 ± 1.214
3.927LysPro: 3.927 ± 0.969
1.309LysGln: 1.309 ± 0.712
2.618LysArg: 2.618 ± 1.331
1.963LysSer: 1.963 ± 0.826
1.963LysThr: 1.963 ± 1.632
5.89LysVal: 5.89 ± 3.472
0.0LysTrp: 0.0 ± 0.0
1.963LysTyr: 1.963 ± 1.001
0.0LysXaa: 0.0 ± 0.0
Leu
1.963LeuAla: 1.963 ± 1.494
1.309LeuCys: 1.309 ± 1.088
3.272LeuAsp: 3.272 ± 1.172
1.963LeuGlu: 1.963 ± 1.277
2.618LeuPhe: 2.618 ± 1.545
4.581LeuGly: 4.581 ± 1.394
4.581LeuHis: 4.581 ± 1.512
0.654LeuIle: 0.654 ± 0.602
3.927LeuLys: 3.927 ± 0.886
1.963LeuLeu: 1.963 ± 1.162
1.963LeuMet: 1.963 ± 1.009
4.581LeuAsn: 4.581 ± 1.545
3.272LeuPro: 3.272 ± 0.856
2.618LeuGln: 2.618 ± 1.486
3.927LeuArg: 3.927 ± 1.534
7.199LeuSer: 7.199 ± 1.287
5.236LeuThr: 5.236 ± 1.671
3.927LeuVal: 3.927 ± 1.206
1.309LeuTrp: 1.309 ± 0.641
3.927LeuTyr: 3.927 ± 1.733
0.0LeuXaa: 0.0 ± 0.0
Met
2.618MetAla: 2.618 ± 1.311
0.0MetCys: 0.0 ± 0.0
2.618MetAsp: 2.618 ± 1.374
2.618MetGlu: 2.618 ± 1.208
1.309MetPhe: 1.309 ± 0.873
1.309MetGly: 1.309 ± 1.088
1.309MetHis: 1.309 ± 0.867
0.654MetIle: 0.654 ± 0.541
1.963MetLys: 1.963 ± 0.651
0.654MetLeu: 0.654 ± 0.541
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.963MetPro: 1.963 ± 0.873
0.0MetGln: 0.0 ± 0.0
0.654MetArg: 0.654 ± 0.609
2.618MetSer: 2.618 ± 1.778
1.963MetThr: 1.963 ± 0.899
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.963MetTyr: 1.963 ± 1.325
0.0MetXaa: 0.0 ± 0.0
Asn
3.272AsnAla: 3.272 ± 0.747
1.963AsnCys: 1.963 ± 0.998
1.963AsnAsp: 1.963 ± 1.001
2.618AsnGlu: 2.618 ± 1.463
0.654AsnPhe: 0.654 ± 0.602
1.963AsnGly: 1.963 ± 0.915
3.927AsnHis: 3.927 ± 2.635
4.581AsnIle: 4.581 ± 1.298
1.963AsnLys: 1.963 ± 1.131
3.272AsnLeu: 3.272 ± 1.251
0.654AsnMet: 0.654 ± 1.244
5.236AsnAsn: 5.236 ± 1.739
3.272AsnPro: 3.272 ± 1.271
0.654AsnGln: 0.654 ± 0.609
6.545AsnArg: 6.545 ± 1.891
4.581AsnSer: 4.581 ± 2.098
2.618AsnThr: 2.618 ± 1.855
5.236AsnVal: 5.236 ± 1.424
0.0AsnTrp: 0.0 ± 0.0
1.963AsnTyr: 1.963 ± 0.635
0.0AsnXaa: 0.0 ± 0.0
Pro
0.654ProAla: 0.654 ± 0.609
0.654ProCys: 0.654 ± 0.642
2.618ProAsp: 2.618 ± 0.896
2.618ProGlu: 2.618 ± 1.614
1.963ProPhe: 1.963 ± 1.001
1.963ProGly: 1.963 ± 0.993
3.927ProHis: 3.927 ± 1.477
5.89ProIle: 5.89 ± 1.614
3.272ProLys: 3.272 ± 1.214
3.272ProLeu: 3.272 ± 0.823
1.309ProMet: 1.309 ± 1.284
2.618ProAsn: 2.618 ± 1.094
3.272ProPro: 3.272 ± 1.809
1.963ProGln: 1.963 ± 1.09
4.581ProArg: 4.581 ± 1.857
7.199ProSer: 7.199 ± 2.549
3.272ProThr: 3.272 ± 1.656
2.618ProVal: 2.618 ± 1.311
1.963ProTrp: 1.963 ± 0.946
1.309ProTyr: 1.309 ± 0.797
0.0ProXaa: 0.0 ± 0.0
Gln
3.927GlnAla: 3.927 ± 1.499
0.0GlnCys: 0.0 ± 0.0
1.309GlnAsp: 1.309 ± 0.891
2.618GlnGlu: 2.618 ± 0.738
1.963GlnPhe: 1.963 ± 0.993
0.654GlnGly: 0.654 ± 0.541
0.654GlnHis: 0.654 ± 0.602
2.618GlnIle: 2.618 ± 1.427
0.654GlnLys: 0.654 ± 0.544
3.272GlnLeu: 3.272 ± 1.635
0.654GlnMet: 0.654 ± 0.686
0.0GlnAsn: 0.0 ± 0.0
1.963GlnPro: 1.963 ± 1.527
2.618GlnGln: 2.618 ± 0.981
1.963GlnArg: 1.963 ± 0.716
2.618GlnSer: 2.618 ± 1.478
1.963GlnThr: 1.963 ± 1.331
3.272GlnVal: 3.272 ± 1.47
0.654GlnTrp: 0.654 ± 0.541
3.927GlnTyr: 3.927 ± 1.11
0.0GlnXaa: 0.0 ± 0.0
Arg
3.272ArgAla: 3.272 ± 1.222
2.618ArgCys: 2.618 ± 1.18
3.927ArgAsp: 3.927 ± 1.633
1.963ArgGlu: 1.963 ± 1.494
5.89ArgPhe: 5.89 ± 2.231
2.618ArgGly: 2.618 ± 1.181
3.272ArgHis: 3.272 ± 1.704
5.236ArgIle: 5.236 ± 2.227
1.963ArgLys: 1.963 ± 0.853
7.199ArgLeu: 7.199 ± 1.43
0.654ArgMet: 0.654 ± 0.541
1.963ArgAsn: 1.963 ± 1.222
4.581ArgPro: 4.581 ± 1.194
1.963ArgGln: 1.963 ± 0.651
12.435ArgArg: 12.435 ± 3.995
7.853ArgSer: 7.853 ± 1.224
5.236ArgThr: 5.236 ± 2.223
2.618ArgVal: 2.618 ± 0.589
0.0ArgTrp: 0.0 ± 0.0
3.272ArgTyr: 3.272 ± 1.757
0.0ArgXaa: 0.0 ± 0.0
Ser
5.89SerAla: 5.89 ± 1.607
1.963SerCys: 1.963 ± 0.899
3.272SerAsp: 3.272 ± 1.046
1.309SerGlu: 1.309 ± 0.59
6.545SerPhe: 6.545 ± 1.864
3.927SerGly: 3.927 ± 1.285
1.963SerHis: 1.963 ± 1.108
4.581SerIle: 4.581 ± 1.454
2.618SerLys: 2.618 ± 0.953
6.545SerLeu: 6.545 ± 1.114
2.618SerMet: 2.618 ± 1.424
7.199SerAsn: 7.199 ± 2.25
5.89SerPro: 5.89 ± 1.556
3.272SerGln: 3.272 ± 1.229
9.817SerArg: 9.817 ± 1.258
13.089SerSer: 13.089 ± 3.642
8.508SerThr: 8.508 ± 1.661
3.272SerVal: 3.272 ± 1.54
1.309SerTrp: 1.309 ± 0.797
2.618SerTyr: 2.618 ± 0.868
0.0SerXaa: 0.0 ± 0.0
Thr
7.199ThrAla: 7.199 ± 2.611
0.654ThrCys: 0.654 ± 0.609
1.963ThrAsp: 1.963 ± 0.913
2.618ThrGlu: 2.618 ± 0.99
2.618ThrPhe: 2.618 ± 1.115
4.581ThrGly: 4.581 ± 1.06
3.927ThrHis: 3.927 ± 1.832
4.581ThrIle: 4.581 ± 1.894
1.963ThrLys: 1.963 ± 1.319
3.272ThrLeu: 3.272 ± 1.013
3.272ThrMet: 3.272 ± 1.782
3.927ThrAsn: 3.927 ± 1.317
1.963ThrPro: 1.963 ± 1.003
1.309ThrGln: 1.309 ± 1.219
1.963ThrArg: 1.963 ± 1.21
4.581ThrSer: 4.581 ± 0.753
3.272ThrThr: 3.272 ± 2.085
4.581ThrVal: 4.581 ± 1.226
0.654ThrTrp: 0.654 ± 0.544
2.618ThrTyr: 2.618 ± 1.164
0.0ThrXaa: 0.0 ± 0.0
Val
1.309ValAla: 1.309 ± 0.727
1.309ValCys: 1.309 ± 0.727
3.927ValAsp: 3.927 ± 0.956
2.618ValGlu: 2.618 ± 1.714
3.272ValPhe: 3.272 ± 0.821
1.309ValGly: 1.309 ± 0.807
1.309ValHis: 1.309 ± 1.082
5.89ValIle: 5.89 ± 1.667
3.927ValLys: 3.927 ± 1.856
1.309ValLeu: 1.309 ± 0.59
1.963ValMet: 1.963 ± 1.325
1.309ValAsn: 1.309 ± 0.867
3.272ValPro: 3.272 ± 0.862
1.963ValGln: 1.963 ± 0.826
6.545ValArg: 6.545 ± 2.728
4.581ValSer: 4.581 ± 1.706
3.927ValThr: 3.927 ± 1.867
1.309ValVal: 1.309 ± 0.858
0.0ValTrp: 0.0 ± 0.0
4.581ValTyr: 4.581 ± 1.805
0.0ValXaa: 0.0 ± 0.0
Trp
3.272TrpAla: 3.272 ± 0.747
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.309TrpGlu: 1.309 ± 1.203
0.654TrpPhe: 0.654 ± 0.751
1.309TrpGly: 1.309 ± 0.59
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.309TrpLys: 1.309 ± 0.803
1.309TrpLeu: 1.309 ± 0.873
1.309TrpMet: 1.309 ± 0.807
0.0TrpAsn: 0.0 ± 0.0
0.654TrpPro: 0.654 ± 0.544
0.654TrpGln: 0.654 ± 0.544
0.654TrpArg: 0.654 ± 0.642
0.0TrpSer: 0.0 ± 0.0
0.654TrpThr: 0.654 ± 0.602
0.654TrpVal: 0.654 ± 0.544
0.0TrpTrp: 0.0 ± 0.0
0.654TrpTyr: 0.654 ± 0.544
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.272TyrAla: 3.272 ± 1.123
0.654TyrCys: 0.654 ± 0.609
1.309TyrAsp: 1.309 ± 1.284
0.654TyrGlu: 0.654 ± 0.642
1.963TyrPhe: 1.963 ± 0.987
1.963TyrGly: 1.963 ± 0.651
1.309TyrHis: 1.309 ± 1.088
3.272TyrIle: 3.272 ± 1.302
1.309TyrLys: 1.309 ± 0.727
3.272TyrLeu: 3.272 ± 0.821
3.272TyrMet: 3.272 ± 0.85
2.618TyrAsn: 2.618 ± 1.208
1.309TyrPro: 1.309 ± 0.884
0.654TyrGln: 0.654 ± 0.642
7.199TyrArg: 7.199 ± 2.124
3.272TyrSer: 3.272 ± 1.083
1.309TyrThr: 1.309 ± 0.712
3.272TyrVal: 3.272 ± 1.258
0.0TyrTrp: 0.0 ± 0.0
1.963TyrTyr: 1.963 ± 1.21
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1529 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski