Henriciella algicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomonadales; Hyphomonadaceae; Henriciella

Average proteome isoelectric point is 5.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3048 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A399RMX8|A0A399RMX8_9PROT Glutaredoxin OS=Henriciella algicola OX=1608422 GN=D1222_05325 PE=4 SV=1
MM1 pKa = 6.51KK2 pKa = 9.49TVRR5 pKa = 11.84IAALAVSALGLCMSGSAQDD24 pKa = 3.7FMKK27 pKa = 10.35EE28 pKa = 3.72ATYY31 pKa = 8.52GTIEE35 pKa = 4.47LSAGFQPDD43 pKa = 3.14PHH45 pKa = 7.53EE46 pKa = 5.05IEE48 pKa = 4.33LRR50 pKa = 11.84AGGSLDD56 pKa = 4.94ASDD59 pKa = 4.78QLGSSCPGYY68 pKa = 10.79VADD71 pKa = 5.81APDD74 pKa = 3.71YY75 pKa = 11.53DD76 pKa = 4.3LLYY79 pKa = 11.0DD80 pKa = 4.21NGSGSLPLIITVRR93 pKa = 11.84SAYY96 pKa = 8.43DD97 pKa = 3.18TTLVINTPDD106 pKa = 4.12GDD108 pKa = 4.55WICDD112 pKa = 3.69DD113 pKa = 5.4DD114 pKa = 5.52SGPSHH119 pKa = 6.41NPSVRR124 pKa = 11.84FDD126 pKa = 3.74PGSDD130 pKa = 2.92GLYY133 pKa = 10.08DD134 pKa = 3.41IWVGTYY140 pKa = 10.62DD141 pKa = 4.74RR142 pKa = 11.84GALQDD147 pKa = 3.44ATLVISEE154 pKa = 4.94LSSSEE159 pKa = 4.11DD160 pKa = 3.13

Molecular weight: 16.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A399RCX0|A0A399RCX0_9PROT Uncharacterized protein OS=Henriciella algicola OX=1608422 GN=D1222_14755 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84LKK11 pKa = 10.1RR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.65GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 8.89VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.99GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3048

0

3048

965903

18

2439

316.9

34.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.864 ± 0.061

0.846 ± 0.014

6.313 ± 0.034

6.715 ± 0.049

3.803 ± 0.028

8.532 ± 0.057

1.834 ± 0.02

5.24 ± 0.034

3.569 ± 0.04

9.56 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.523 ± 0.02

2.818 ± 0.029

4.866 ± 0.036

3.138 ± 0.026

6.531 ± 0.041

5.931 ± 0.035

5.362 ± 0.031

6.835 ± 0.034

1.374 ± 0.018

2.346 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski