Pedobacter hartonius

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4634 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3WDI3|A0A1H3WDI3_9SPHI 6-phosphogluconate dehydrogenase decarboxylating OS=Pedobacter hartonius OX=425514 GN=SAMN05443550_101206 PE=3 SV=1
MM1 pKa = 7.88KK2 pKa = 9.33ITTYY6 pKa = 7.47EE7 pKa = 3.87QRR9 pKa = 11.84DD10 pKa = 4.55LIPLTISVLGTISFFNACNTLKK32 pKa = 10.9YY33 pKa = 10.38LVEE36 pKa = 4.32TEE38 pKa = 3.99FCDD41 pKa = 4.35LKK43 pKa = 11.46GLISTDD49 pKa = 3.44TLDD52 pKa = 4.28DD53 pKa = 3.87SSIALLDD60 pKa = 3.68VVDD63 pKa = 4.61NDD65 pKa = 3.61FHH67 pKa = 7.9KK68 pKa = 10.06ITYY71 pKa = 10.56DD72 pKa = 3.19SMTGIYY78 pKa = 7.52EE79 pKa = 4.41TAHH82 pKa = 6.15SLANIYY88 pKa = 10.68GLDD91 pKa = 3.09IGTIIRR97 pKa = 11.84DD98 pKa = 3.43EE99 pKa = 4.4RR100 pKa = 11.84LTEE103 pKa = 3.85MGEE106 pKa = 4.14DD107 pKa = 3.74FVLEE111 pKa = 4.64LIVDD115 pKa = 3.81QFPEE119 pKa = 4.45DD120 pKa = 3.62NFVDD124 pKa = 3.9EE125 pKa = 5.12DD126 pKa = 4.07FEE128 pKa = 4.45PAEE131 pKa = 4.29SLDD134 pKa = 3.78LFAFSLVNVVNFLCSMLLAGKK155 pKa = 10.21VDD157 pKa = 5.91FDD159 pKa = 5.6LSWTSSKK166 pKa = 10.67FYY168 pKa = 11.03LDD170 pKa = 4.76FLSEE174 pKa = 4.42DD175 pKa = 3.86YY176 pKa = 10.81SGKK179 pKa = 9.55EE180 pKa = 3.54HH181 pKa = 6.73ATALQLLQEE190 pKa = 4.65LGSVLSLSHH199 pKa = 6.69GRR201 pKa = 11.84ILDD204 pKa = 3.77LLYY207 pKa = 11.29NNGDD211 pKa = 3.65ICWDD215 pKa = 3.7DD216 pKa = 3.45PP217 pKa = 4.23

Molecular weight: 24.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H3ZSW0|A0A1H3ZSW0_9SPHI Thiamine-phosphate pyrophosphorylase OS=Pedobacter hartonius OX=425514 GN=SAMN05443550_102480 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.41KK6 pKa = 9.7RR7 pKa = 11.84KK8 pKa = 6.09SHH10 pKa = 6.26KK11 pKa = 9.67MATHH15 pKa = 5.94KK16 pKa = 10.35RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.26NRR25 pKa = 11.84HH26 pKa = 4.71KK27 pKa = 10.87KK28 pKa = 9.36KK29 pKa = 10.77

Molecular weight: 3.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4634

0

4634

1541803

29

3662

332.7

37.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.581 ± 0.035

0.777 ± 0.01

5.331 ± 0.027

5.742 ± 0.042

4.9 ± 0.026

6.867 ± 0.036

1.877 ± 0.018

7.319 ± 0.034

6.831 ± 0.041

9.728 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.34 ± 0.017

5.433 ± 0.034

3.803 ± 0.021

3.648 ± 0.023

4.062 ± 0.022

6.557 ± 0.034

5.772 ± 0.04

6.267 ± 0.026

1.108 ± 0.015

4.056 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski