Xylanibacterium ulmi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae; Xylanibacterium

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3500 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7M6R4|A0A4Q7M6R4_9MICO Uncharacterized protein OS=Xylanibacterium ulmi OX=228973 GN=EV386_2664 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 10.12MSMTKK7 pKa = 10.14RR8 pKa = 11.84AARR11 pKa = 11.84VAALATAGALALAACTPGGDD31 pKa = 4.1AADD34 pKa = 5.06DD35 pKa = 4.21GAATDD40 pKa = 3.7AATDD44 pKa = 3.55GGGAEE49 pKa = 4.17GTVTVWHH56 pKa = 6.32YY57 pKa = 10.99FSDD60 pKa = 4.15PQQVALMDD68 pKa = 4.28KK69 pKa = 10.12YY70 pKa = 11.59AEE72 pKa = 4.24LAEE75 pKa = 4.21AANPGMTVDD84 pKa = 4.16NVFVPYY90 pKa = 10.78DD91 pKa = 3.39QMNSQLISAAGAGQGPDD108 pKa = 3.14VVIFNGAEE116 pKa = 3.79TSTIALAGALAPLDD130 pKa = 4.49DD131 pKa = 4.23LWGTFADD138 pKa = 4.16ADD140 pKa = 3.86QFPDD144 pKa = 3.92SVIHH148 pKa = 5.75TVDD151 pKa = 2.76GTMYY155 pKa = 10.9AVQGYY160 pKa = 10.33VNLLGLWYY168 pKa = 10.51NQDD171 pKa = 3.18ILDD174 pKa = 4.82EE175 pKa = 5.24IGVQPPTTIDD185 pKa = 3.49EE186 pKa = 4.85LEE188 pKa = 4.2SAMAAAVAAGHH199 pKa = 6.47GGITLSGLPNSQGEE213 pKa = 4.36WQGFPWLSAEE223 pKa = 3.91GFTYY227 pKa = 10.25EE228 pKa = 4.53NPSAQALEE236 pKa = 4.41AGLTRR241 pKa = 11.84VSNWVEE247 pKa = 4.16QGWLPQEE254 pKa = 4.1AVNWDD259 pKa = 3.29QTVPFQQFAAGGFAFAANGNWQQGTAEE286 pKa = 4.25ADD288 pKa = 2.97ADD290 pKa = 3.72FTYY293 pKa = 10.39GVVPLPLGDD302 pKa = 3.72SGQVYY307 pKa = 10.6LGGEE311 pKa = 4.2GAGIGANSANPEE323 pKa = 4.21LAWAYY328 pKa = 7.53LTSSYY333 pKa = 11.28LSFEE337 pKa = 4.59GNLAAADD344 pKa = 4.01LVGSLPARR352 pKa = 11.84ADD354 pKa = 3.39AGQHH358 pKa = 6.63DD359 pKa = 5.19SVTSNEE365 pKa = 3.9LLKK368 pKa = 10.87PFAEE372 pKa = 4.85TITMFGAQYY381 pKa = 10.09PSAAIPAEE389 pKa = 3.93AVADD393 pKa = 3.71VQLRR397 pKa = 11.84MGQAWSAVIGRR408 pKa = 11.84QHH410 pKa = 6.38SPADD414 pKa = 3.6AAHH417 pKa = 6.23TAMTALEE424 pKa = 4.26GLLGG428 pKa = 3.85

Molecular weight: 44.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7M511|A0A4Q7M511_9MICO Phospholipase D-like protein OS=Xylanibacterium ulmi OX=228973 GN=EV386_3404 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3500

0

3500

1185822

30

2393

338.8

35.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.151 ± 0.067

0.577 ± 0.01

6.268 ± 0.034

5.052 ± 0.036

2.618 ± 0.026

9.296 ± 0.035

2.113 ± 0.019

3.161 ± 0.031

1.538 ± 0.025

10.154 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.609 ± 0.015

1.569 ± 0.022

5.956 ± 0.034

2.756 ± 0.021

7.903 ± 0.047

4.897 ± 0.027

6.184 ± 0.035

9.867 ± 0.04

1.536 ± 0.018

1.794 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski