Pudu puda papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyokappapapillomavirus; Dyokappapapillomavirus 5

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I9KI84|A0A1I9KI84_9PAPI Protein E6 OS=Pudu puda papillomavirus 1 OX=1747360 GN=E6 PE=3 SV=1
MM1 pKa = 6.7VLKK4 pKa = 10.33RR5 pKa = 11.84RR6 pKa = 11.84KK7 pKa = 9.17RR8 pKa = 11.84AAAEE12 pKa = 3.62DD13 pKa = 4.94LYY15 pKa = 11.0RR16 pKa = 11.84QCQLGGDD23 pKa = 4.38CPPDD27 pKa = 3.05IKK29 pKa = 11.25NKK31 pKa = 9.8IEE33 pKa = 4.37HH34 pKa = 5.77NTIADD39 pKa = 5.48LILKK43 pKa = 8.86WGSLGVFLGGLGIGTGRR60 pKa = 11.84GTGGRR65 pKa = 11.84FGYY68 pKa = 10.38RR69 pKa = 11.84PLPEE73 pKa = 4.18PAAPGGRR80 pKa = 11.84PGATLVRR87 pKa = 11.84PTIPVDD93 pKa = 3.44TVTPDD98 pKa = 3.16ITPVDD103 pKa = 3.9ALDD106 pKa = 4.03ASSPSIVPLTDD117 pKa = 3.46AGTDD121 pKa = 3.45SSIVEE126 pKa = 4.71VIAEE130 pKa = 4.08AQPNGGPNAGSTEE143 pKa = 4.02PPSIEE148 pKa = 4.23VTPEE152 pKa = 3.78PPPKK156 pKa = 10.04KK157 pKa = 9.93IRR159 pKa = 11.84VTKK162 pKa = 9.77SQHH165 pKa = 5.74PNPVYY170 pKa = 10.58DD171 pKa = 4.49FSYY174 pKa = 11.11DD175 pKa = 3.42GTEE178 pKa = 4.09TSHH181 pKa = 6.32TGQSFVHH188 pKa = 6.18MGSSAQYY195 pKa = 10.02IGGEE199 pKa = 4.14VTGEE203 pKa = 4.04EE204 pKa = 4.57IEE206 pKa = 4.2LSTWSRR212 pKa = 11.84PGEE215 pKa = 3.86ATGDD219 pKa = 3.5SFSFNTVEE227 pKa = 4.23TGFGTSTPAQATVSAPRR244 pKa = 11.84LYY246 pKa = 10.67GRR248 pKa = 11.84RR249 pKa = 11.84IDD251 pKa = 3.61QVRR254 pKa = 11.84VSDD257 pKa = 3.72TAFLTRR263 pKa = 11.84PDD265 pKa = 3.6TLIVFDD271 pKa = 4.8NPTFNPEE278 pKa = 3.48VTQVFEE284 pKa = 4.15QDD286 pKa = 3.67LEE288 pKa = 4.23EE289 pKa = 4.55LAAAPDD295 pKa = 4.31PNFQDD300 pKa = 3.43VNRR303 pKa = 11.84LSRR306 pKa = 11.84PYY308 pKa = 10.54YY309 pKa = 9.1SQTNEE314 pKa = 2.86GRR316 pKa = 11.84IRR318 pKa = 11.84VSRR321 pKa = 11.84VGSRR325 pKa = 11.84GTLTTRR331 pKa = 11.84SGIRR335 pKa = 11.84IGPTVHH341 pKa = 7.02FFQDD345 pKa = 3.94LSSIAPGDD353 pKa = 3.75TVIQEE358 pKa = 4.43SLGEE362 pKa = 4.05VSGSHH367 pKa = 6.84TIYY370 pKa = 10.23HH371 pKa = 5.89GHH373 pKa = 5.87SSEE376 pKa = 4.07EE377 pKa = 3.97FEE379 pKa = 4.98MIDD382 pKa = 3.94LAPEE386 pKa = 3.96SEE388 pKa = 4.76IYY390 pKa = 10.71SEE392 pKa = 5.99DD393 pKa = 3.72DD394 pKa = 3.61LLDD397 pKa = 4.69HH398 pKa = 7.22IEE400 pKa = 4.09EE401 pKa = 4.45VGDD404 pKa = 3.67NLQLVIGGGRR414 pKa = 11.84RR415 pKa = 11.84QPPQSVPTFKK425 pKa = 10.38TGLQGAGGIDD435 pKa = 3.8VIYY438 pKa = 10.04PNYY441 pKa = 9.82PKK443 pKa = 10.23IPGEE447 pKa = 4.11FEE449 pKa = 3.96PPAVPINPSGDD460 pKa = 3.42TPEE463 pKa = 5.73IIVTFLDD470 pKa = 3.16SSYY473 pKa = 11.03TVADD477 pKa = 3.69PSLFRR482 pKa = 11.84LRR484 pKa = 11.84KK485 pKa = 7.31RR486 pKa = 11.84RR487 pKa = 11.84KK488 pKa = 9.25RR489 pKa = 11.84RR490 pKa = 11.84FHH492 pKa = 6.4

Molecular weight: 53.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I9KXY4|A0A1I9KXY4_9PAPI Replication protein E1 OS=Pudu puda papillomavirus 1 OX=1747360 GN=E1 PE=3 SV=1
MM1 pKa = 6.94EE2 pKa = 4.74TLRR5 pKa = 11.84DD6 pKa = 3.54RR7 pKa = 11.84LDD9 pKa = 3.49AVQEE13 pKa = 4.1EE14 pKa = 5.17LLTLYY19 pKa = 10.88EE20 pKa = 4.63EE21 pKa = 5.17GNTDD25 pKa = 2.77IDD27 pKa = 4.01SQIKK31 pKa = 8.98HH32 pKa = 5.36WNLLRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 4.03HH40 pKa = 6.33VLLHH44 pKa = 6.08FARR47 pKa = 11.84KK48 pKa = 8.91QGIYY52 pKa = 10.28RR53 pKa = 11.84LGLQTVPPLQVSQQKK68 pKa = 10.32AKK70 pKa = 10.43EE71 pKa = 4.19AIEE74 pKa = 4.11MVLTLQSLKK83 pKa = 10.28KK84 pKa = 10.17SPYY87 pKa = 10.46GEE89 pKa = 4.33EE90 pKa = 3.71TWTLADD96 pKa = 3.37TSRR99 pKa = 11.84EE100 pKa = 4.03LFEE103 pKa = 4.85TPPKK107 pKa = 10.83NCFKK111 pKa = 10.91KK112 pKa = 9.83HH113 pKa = 4.62GASVEE118 pKa = 3.79VRR120 pKa = 11.84YY121 pKa = 10.57DD122 pKa = 3.5GSAANSMLYY131 pKa = 8.78TAWSDD136 pKa = 2.61IYY138 pKa = 11.29YY139 pKa = 8.3QTDD142 pKa = 3.79YY143 pKa = 11.29SWEE146 pKa = 4.09KK147 pKa = 8.24TQGHH151 pKa = 5.69VDD153 pKa = 3.46YY154 pKa = 9.65TGCYY158 pKa = 9.56YY159 pKa = 10.96YY160 pKa = 10.83EE161 pKa = 5.6DD162 pKa = 4.08DD163 pKa = 4.4VKK165 pKa = 10.69IYY167 pKa = 9.91YY168 pKa = 10.6LKK170 pKa = 11.07FEE172 pKa = 5.58DD173 pKa = 4.26DD174 pKa = 3.41AARR177 pKa = 11.84YY178 pKa = 8.48SATGEE183 pKa = 4.09WEE185 pKa = 3.88VHH187 pKa = 5.22YY188 pKa = 10.85KK189 pKa = 10.57NDD191 pKa = 2.93IFSPVASVSSTSSWTPSPVAATSTGGTAEE220 pKa = 4.52DD221 pKa = 3.95TQQYY225 pKa = 8.36PVPLDD230 pKa = 3.41NTPATVKK237 pKa = 10.05RR238 pKa = 11.84RR239 pKa = 11.84RR240 pKa = 11.84TGSPSRR246 pKa = 11.84TTKK249 pKa = 10.17RR250 pKa = 11.84GRR252 pKa = 11.84PRR254 pKa = 11.84RR255 pKa = 11.84KK256 pKa = 9.06PRR258 pKa = 11.84SSTPRR263 pKa = 11.84GRR265 pKa = 11.84FSAQEE270 pKa = 3.69EE271 pKa = 4.6GRR273 pKa = 11.84RR274 pKa = 11.84RR275 pKa = 11.84SQQEE279 pKa = 3.19EE280 pKa = 4.36GQRR283 pKa = 11.84QRR285 pKa = 11.84RR286 pKa = 11.84TQQRR290 pKa = 11.84QQGEE294 pKa = 4.3RR295 pKa = 11.84ARR297 pKa = 11.84SPRR300 pKa = 11.84LPEE303 pKa = 3.54EE304 pKa = 4.16SARR307 pKa = 11.84QVAEE311 pKa = 3.96GAGRR315 pKa = 11.84RR316 pKa = 11.84HH317 pKa = 5.65RR318 pKa = 11.84RR319 pKa = 11.84SRR321 pKa = 11.84LDD323 pKa = 3.18QLLADD328 pKa = 4.48AADD331 pKa = 3.9PPIVLLRR338 pKa = 11.84GGANQLKK345 pKa = 9.22CLRR348 pKa = 11.84YY349 pKa = 9.28RR350 pKa = 11.84LIRR353 pKa = 11.84KK354 pKa = 9.24YY355 pKa = 10.68SALFSLISSTWSWVGLQGPGGRR377 pKa = 11.84NRR379 pKa = 11.84LMLAFNGYY387 pKa = 7.36QQRR390 pKa = 11.84TDD392 pKa = 4.67FINSVPLPPGVSVVLGTLQGII413 pKa = 4.3

Molecular weight: 47.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2249

86

609

374.8

42.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.514 ± 0.531

2.179 ± 1.0

5.78 ± 0.175

6.981 ± 0.459

4.357 ± 0.489

6.892 ± 1.035

1.823 ± 0.23

4.491 ± 0.507

4.936 ± 0.749

8.982 ± 1.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.601 ± 0.388

3.913 ± 0.563

5.958 ± 1.058

5.113 ± 0.401

6.447 ± 0.778

7.603 ± 0.508

6.803 ± 0.445

5.558 ± 0.459

1.734 ± 0.41

3.335 ± 0.396
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski