Bacteroides pyogenes JCM 6292

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides pyogenes

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3340 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W4P4Z1|W4P4Z1_9BACE Mucin-desulfating sulfatase OS=Bacteroides pyogenes JCM 6292 OX=1235809 GN=JCM6292_1010 PE=3 SV=1
MM1 pKa = 7.31MDD3 pKa = 3.26YY4 pKa = 11.02RR5 pKa = 11.84LIYY8 pKa = 9.85CLRR11 pKa = 11.84NGLPLDD17 pKa = 3.49MDD19 pKa = 4.14VYY21 pKa = 11.27DD22 pKa = 4.0AAEE25 pKa = 4.05WSCITEE31 pKa = 4.04LSEE34 pKa = 4.41QSVLQGSIPVAIPDD48 pKa = 4.0FTRR51 pKa = 11.84GAIWPDD57 pKa = 3.17NPP59 pKa = 4.21

Molecular weight: 6.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W4PCU1|W4PCU1_9BACE Uncharacterized protein OS=Bacteroides pyogenes JCM 6292 OX=1235809 GN=JCM6292_3513 PE=4 SV=1
MM1 pKa = 7.55SCLSCRR7 pKa = 11.84IKK9 pKa = 10.65ASHH12 pKa = 6.31SSYY15 pKa = 10.42VSSIVFGRR23 pKa = 11.84RR24 pKa = 11.84LSLVCFLSHH33 pKa = 5.91GHH35 pKa = 5.21FTRR38 pKa = 11.84SSSRR42 pKa = 11.84MSRR45 pKa = 11.84KK46 pKa = 9.31RR47 pKa = 11.84PKK49 pKa = 10.68ASICSCLVCFIIYY62 pKa = 9.25YY63 pKa = 8.94FFVIFLFSMQILFLSRR79 pKa = 11.84AKK81 pKa = 10.17ILQIWEE87 pKa = 4.44RR88 pKa = 11.84KK89 pKa = 9.46RR90 pKa = 11.84EE91 pKa = 3.93MGKK94 pKa = 10.2

Molecular weight: 11.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3340

0

3340

982162

38

1903

294.1

33.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.307 ± 0.039

1.214 ± 0.017

5.335 ± 0.033

6.761 ± 0.044

4.634 ± 0.027

6.905 ± 0.039

1.908 ± 0.02

6.691 ± 0.04

6.823 ± 0.041

9.066 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.781 ± 0.018

4.867 ± 0.041

3.8 ± 0.03

3.241 ± 0.026

5.175 ± 0.037

6.143 ± 0.035

5.425 ± 0.031

6.425 ± 0.038

1.208 ± 0.017

4.292 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski