Diversispora epigaea

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Diversisporales; Diversisporaceae; Diversispora

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A397J556|A0A397J556_9GLOM Uncharacterized protein OS=Diversispora epigaea OX=1348612 GN=Glove_114g88 PE=4 SV=1
MM1 pKa = 8.11DD2 pKa = 6.24KK3 pKa = 10.22IQHH6 pKa = 6.24IKK8 pKa = 7.65THH10 pKa = 5.83SADD13 pKa = 3.67TISRR17 pKa = 11.84FTNLQIQTIIDD28 pKa = 3.84HH29 pKa = 5.68FTEE32 pKa = 4.35KK33 pKa = 10.8PNMEE37 pKa = 4.27FTDD40 pKa = 4.62DD41 pKa = 4.22PSDD44 pKa = 3.71GLPEE48 pKa = 4.03IKK50 pKa = 10.72ANTSYY55 pKa = 10.12PAPKK59 pKa = 9.87TYY61 pKa = 10.38ISCSNSDD68 pKa = 3.91FSDD71 pKa = 5.29DD72 pKa = 5.05DD73 pKa = 6.03DD74 pKa = 6.32SDD76 pKa = 4.7NDD78 pKa = 3.8DD79 pKa = 5.58DD80 pKa = 4.66EE81 pKa = 7.17ANDD84 pKa = 3.46MSVTYY89 pKa = 10.49FDD91 pKa = 5.87DD92 pKa = 3.71EE93 pKa = 4.4AEE95 pKa = 4.22YY96 pKa = 11.04YY97 pKa = 11.07YY98 pKa = 11.4NLDD101 pKa = 3.62GGNLL105 pKa = 3.49

Molecular weight: 11.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A397HCE2|A0A397HCE2_9GLOM Uncharacterized protein OS=Diversispora epigaea OX=1348612 GN=Glove_353g27 PE=4 SV=1
MM1 pKa = 8.02PKK3 pKa = 10.05RR4 pKa = 11.84KK5 pKa = 9.46NLEE8 pKa = 4.09NPTPAPLRR16 pKa = 11.84RR17 pKa = 11.84SPRR20 pKa = 11.84IAARR24 pKa = 11.84VAAQQLTPTPGRR36 pKa = 11.84PPKK39 pKa = 10.04RR40 pKa = 11.84GRR42 pKa = 11.84GRR44 pKa = 11.84PRR46 pKa = 11.84KK47 pKa = 7.36NTRR50 pKa = 11.84IAPGKK55 pKa = 9.96

Molecular weight: 6.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28108

0

28108

10124451

49

10082

360.2

41.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.137 ± 0.011

1.549 ± 0.006

5.479 ± 0.01

7.371 ± 0.017

4.558 ± 0.011

4.438 ± 0.017

2.168 ± 0.006

8.327 ± 0.015

8.25 ± 0.019

8.671 ± 0.014

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.924 ± 0.006

7.861 ± 0.021

3.871 ± 0.014

3.763 ± 0.011

4.351 ± 0.011

7.941 ± 0.018

5.495 ± 0.015

4.501 ± 0.012

1.306 ± 0.005

3.996 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski