Arthrobacter ulcerisalmonis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Arthrobacter

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3300 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P5XBW6|A0A3P5XBW6_9MICC Uncharacterized protein OS=Arthrobacter ulcerisalmonis OX=2483813 GN=PSET11_02998 PE=4 SV=1
MM1 pKa = 7.26SRR3 pKa = 11.84ALIIVDD9 pKa = 3.67VQNDD13 pKa = 3.62FCEE16 pKa = 5.09GGTLPVAGGSDD27 pKa = 3.36LAGAISEE34 pKa = 4.56YY35 pKa = 11.09VDD37 pKa = 3.1AHH39 pKa = 6.31QGEE42 pKa = 4.65FDD44 pKa = 4.08HH45 pKa = 7.36VVATQDD51 pKa = 3.0WHH53 pKa = 6.62VDD55 pKa = 3.43PGGHH59 pKa = 6.56FSAEE63 pKa = 3.98PDD65 pKa = 4.67FKK67 pKa = 11.33DD68 pKa = 3.07SWPPHH73 pKa = 5.67CVAGTSGAEE82 pKa = 3.71LHH84 pKa = 7.04ADD86 pKa = 3.68LDD88 pKa = 4.03TEE90 pKa = 4.33YY91 pKa = 10.72IEE93 pKa = 5.29AYY95 pKa = 9.2FRR97 pKa = 11.84KK98 pKa = 9.62GQFSAAYY105 pKa = 9.7SGFEE109 pKa = 3.89GLLAPEE115 pKa = 4.76DD116 pKa = 3.76AVPTGEE122 pKa = 4.19RR123 pKa = 11.84QPGSMPGTEE132 pKa = 4.13SQVDD136 pKa = 4.21LDD138 pKa = 5.14AVGLDD143 pKa = 3.15EE144 pKa = 4.74WLQEE148 pKa = 3.92NDD150 pKa = 2.82VDD152 pKa = 4.32DD153 pKa = 4.21VVIVGLAADD162 pKa = 3.71YY163 pKa = 10.5CVRR166 pKa = 11.84ATALDD171 pKa = 3.88AVQAGYY177 pKa = 10.92GVTVVEE183 pKa = 4.84ALTAGIGDD191 pKa = 4.22DD192 pKa = 3.89LSDD195 pKa = 3.47VFAEE199 pKa = 4.28LEE201 pKa = 4.1LGGVEE206 pKa = 4.61LAA208 pKa = 4.78

Molecular weight: 21.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P5WX77|A0A3P5WX77_9MICC Thymidylate kinase OS=Arthrobacter ulcerisalmonis OX=2483813 GN=tmk PE=3 SV=1
MM1 pKa = 7.61KK2 pKa = 10.31VRR4 pKa = 11.84NSLRR8 pKa = 11.84ALKK11 pKa = 9.65KK12 pKa = 10.17IPGAQIVRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GRR24 pKa = 11.84TFVINKK30 pKa = 8.65LNPRR34 pKa = 11.84MKK36 pKa = 10.4ARR38 pKa = 11.84QGG40 pKa = 3.24

Molecular weight: 4.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3300

0

3300

1050411

29

2089

318.3

33.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.459 ± 0.063

0.585 ± 0.009

5.615 ± 0.039

5.325 ± 0.038

3.202 ± 0.026

8.889 ± 0.034

2.045 ± 0.022

4.421 ± 0.032

2.759 ± 0.031

10.335 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.958 ± 0.018

2.506 ± 0.025

5.394 ± 0.029

3.313 ± 0.023

6.275 ± 0.041

5.969 ± 0.033

6.089 ± 0.035

8.47 ± 0.042

1.392 ± 0.017

2.0 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski