Dysgonomonas capnocytophagoides

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Dysgonomonadaceae;

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3764 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y8KU10|A0A4Y8KU10_9BACT Uncharacterized protein OS=Dysgonomonas capnocytophagoides OX=45254 GN=E2605_18355 PE=4 SV=1
MM1 pKa = 7.55IKK3 pKa = 10.06QYY5 pKa = 10.91NYY7 pKa = 10.0EE8 pKa = 4.07YY9 pKa = 10.69GFAEE13 pKa = 4.17ATVSFQVDD21 pKa = 3.23TDD23 pKa = 3.69VFTAEE28 pKa = 4.66LANEE32 pKa = 4.07TLTFFTWDD40 pKa = 3.36YY41 pKa = 11.69DD42 pKa = 3.67KK43 pKa = 11.58DD44 pKa = 3.83ADD46 pKa = 4.63PVDD49 pKa = 4.16EE50 pKa = 4.3VMKK53 pKa = 10.21KK54 pKa = 10.31YY55 pKa = 10.95AMEE58 pKa = 5.15AIKK61 pKa = 10.46QATFNNYY68 pKa = 9.22SEE70 pKa = 4.74YY71 pKa = 11.06GVISAFEE78 pKa = 4.55DD79 pKa = 3.58NEE81 pKa = 4.37GFGRR85 pKa = 11.84LDD87 pKa = 3.29GSIGITLLEE96 pKa = 4.0VTGYY100 pKa = 11.0DD101 pKa = 3.37FDD103 pKa = 4.42EE104 pKa = 5.7SEE106 pKa = 4.41LTLEE110 pKa = 4.6SEE112 pKa = 4.52

Molecular weight: 12.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y8L4D1|A0A4Y8L4D1_9BACT UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Dysgonomonas capnocytophagoides OX=45254 GN=murG PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84RR10 pKa = 11.84KK11 pKa = 10.03RR12 pKa = 11.84INKK15 pKa = 9.29HH16 pKa = 3.82GFRR19 pKa = 11.84LRR21 pKa = 11.84MATANGRR28 pKa = 11.84RR29 pKa = 11.84VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.27GRR39 pKa = 11.84AKK41 pKa = 10.71LSVSDD46 pKa = 4.22EE47 pKa = 4.0AAKK50 pKa = 10.7

Molecular weight: 5.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3764

0

3764

1361703

25

2491

361.8

40.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.308 ± 0.039

0.943 ± 0.014

5.916 ± 0.025

6.092 ± 0.037

4.727 ± 0.029

6.54 ± 0.037

1.611 ± 0.016

7.96 ± 0.036

7.438 ± 0.032

8.924 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.329 ± 0.017

5.839 ± 0.035

3.447 ± 0.02

3.354 ± 0.023

3.903 ± 0.026

7.06 ± 0.032

5.668 ± 0.028

6.047 ± 0.031

1.22 ± 0.015

4.674 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski